View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_low_9 (Length: 292)
Name: NF14021_low_9
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10820742 - 10820656
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagcgtaattatttaaaaa-atgaaattaattgtatgtaagaaagtcacaagtataattt |
86 |
Q |
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| T |
10820742 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaaatatgaaagtaattgtaggtaagaaagccacaattataattt |
10820656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 10820149 - 10820084
Alignment:
| Q |
203 |
taactaaccagctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttat |
268 |
Q |
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| T |
10820149 |
taactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttat |
10820084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 1607144 - 1607200
Alignment:
| Q |
213 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttatt |
269 |
Q |
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| T |
1607144 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatt |
1607200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 1624165 - 1624221
Alignment:
| Q |
213 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttatt |
269 |
Q |
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| T |
1624165 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatt |
1624221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 1630130 - 1630196
Alignment:
| Q |
203 |
taactaaccagctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttatt |
269 |
Q |
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| T |
1630130 |
taactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatt |
1630196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1629956 - 1630050
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaagcgtaattatt-----taaaaaatgaaattaattgt----atgtaagaaagtcacaagtataattt |
86 |
Q |
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| T |
1629956 |
ccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataattt |
1630050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1606658 - 1606687
Alignment:
| Q |
1 |
ccatcaatacctaaatttaaatgatccaag |
30 |
Q |
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| T |
1606658 |
ccatcaatacctaaatttaaatgatccaag |
1606687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 18785191 - 18785247
Alignment:
| Q |
213 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttatt |
269 |
Q |
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| T |
18785191 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatt |
18785247 |
T |
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