View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14022_low_1 (Length: 682)
Name: NF14022_low_1
Description: NF14022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14022_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Complemental strand, 42834187 - 42833528
Alignment:
| Q |
1 |
tcatcagagctaagagacaaatcaatattgagaggtcgaagacctgatttaagtaacatcttcttccaagatggagtataatattgagttaccgatacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42834187 |
tcatcagagctaagagacaaatcaatattgagaggtcgaagacctgatttaagtaacatcttcttccaatatggagtataatattgagttaccgatacac |
42834088 |
T |
|
| Q |
101 |
tctctcctccaccacctacatcagaattgctagggctttccatctgagaatacgttcaatggttagaatttctcaatgataagaacaatgcgttagnnnn |
200 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42834087 |
tctctcctccaacacctacatcagaattgctagggctttccatctgagaatacgttcaatggttagaatttttcaatgataagaacaatgcgttagaaaa |
42833988 |
T |
|
| Q |
201 |
nnnccataaaaaggtacaatttttctattccataataaaaggtcatgaacatataggtataatgacatgaaatgtaaatttggattgcaattttgaaatg |
300 |
Q |
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| T |
42833987 |
aaaccataaaaaggtacaatttttctattccataataaaaggtcatgaacatatagatataatgacatgaaatgtaaatttggattgcaattttgaaatt |
42833888 |
T |
|
| Q |
301 |
taaatttgttttcctaggttataaaacaaatctaaattctaccataaacaaaaatagcaaagtatcaccatgaaagaaaatcaatttaaaaactgagata |
400 |
Q |
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| T |
42833887 |
taaatttgttttcctaggttataaaacaaatctaaattctaccataaacaaaaatagcaaagtatcaccatgaaagaaaatcaatttaaaaactgagata |
42833788 |
T |
|
| Q |
401 |
cataataaaattttaaaattccactagttgaataagtaacattaactaacacgtaaaattgactacttgactttcttaataacagttaaagttcaagcaa |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42833787 |
cataataaaattttaaaattccactagttgaataagtaacattaactaacacgtaaaattgactacttgactttcttaataacagttcaagttcaagcaa |
42833688 |
T |
|
| Q |
501 |
aacaagttatctataagcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcggtgtttgacaagtacatgtttggaacactggacacacc |
600 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42833687 |
aacgagttatctataagcacagggacaccaagtgtaactgcataagtttcggtgtcatgtcggtgtttgacaagtacatgtttggaacactggacacacc |
42833588 |
T |
|
| Q |
601 |
ttaattcaaaaggtgtcattaacattaactcaaatatatatcaaaattttaaaatcctactggttg |
666 |
Q |
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| T |
42833587 |
ttaattcaaaaagtgtcat------taactcaaatatttatcaaaattttaaaatcctactggttg |
42833528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 407 - 612
Target Start/End: Complemental strand, 42833551 - 42833344
Alignment:
| Q |
407 |
aaaattttaaaattccactagttgaataagtaacattaactaacacgtaaaattgactacttgactttcttaataacagttaaagttcaagcaaaa--ca |
504 |
Q |
| |
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||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||| |||||| |
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| T |
42833551 |
aaaattttaaaatcctactggttgaataagtaacattaactaacacgtaaaattgacaatgagactttcttcataacagttcaagttcaggcaaaaagag |
42833452 |
T |
|
| Q |
505 |
agttatctata-agcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcggtgtttgacaagtacatgtttggaacactggacacacctta |
603 |
Q |
| |
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||||||||||| ||||| ||||||| |||||||||||| |||||| |||||| ||||||| |||||||||| |||| | |||| ||||||||||| |
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| T |
42833451 |
agttatctatagcgcacaaggacaccgagtgtaactaca-atgtttgggtgtcgtgtcggtacttgacaagtatatgtataaaacatcggacacaccttc |
42833353 |
T |
|
| Q |
604 |
attcaaaag |
612 |
Q |
| |
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| ||||||| |
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|
| T |
42833352 |
aatcaaaag |
42833344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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