View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14022_low_3 (Length: 422)
Name: NF14022_low_3
Description: NF14022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14022_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 47116595 - 47117008
Alignment:
| Q |
6 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
105 |
Q |
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| T |
47116595 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
47116694 |
T |
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| Q |
106 |
aaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
205 |
Q |
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| T |
47116695 |
aaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
47116794 |
T |
|
| Q |
206 |
ccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
305 |
Q |
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| T |
47116795 |
ccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
47116894 |
T |
|
| Q |
306 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatgaaatcacaaagcaaggtaagcaacatcaac |
405 |
Q |
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| T |
47116895 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaac |
47116994 |
T |
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| Q |
406 |
gtatcaatgactcg |
419 |
Q |
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| T |
47116995 |
gtatcaatgactcg |
47117008 |
T |
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