View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14022_low_4 (Length: 306)
Name: NF14022_low_4
Description: NF14022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14022_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 45227054 - 45226832
Alignment:
| Q |
33 |
ttggatgatatacataataggtcctgagaagacatattaactcagagaagnnnnnnnnnnta--tgaacatatctactactattataagaaaagtcatta |
130 |
Q |
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| T |
45227054 |
ttggatgatatacataataggtcctgagaagacatattaactcagagaaggaaaaaaaaaaagatgaacatatctactactattataagaaaagtcatta |
45226955 |
T |
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| Q |
131 |
ccaccaaaatttcctaataaaccttatctactagtactatcataagaaaagtcattaccacaaaaattccctaattcactttattaaactcactaaatta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45226954 |
ccaccaaaatttcctaataaaccttatctactagtactatcataagaaaagtcattaccacaaaaattccctaattcactttattaaactcactaaatta |
45226855 |
T |
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| Q |
231 |
atgggttaaatcgctatttcatat |
254 |
Q |
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|| ||||||||||||| ||||||| |
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| T |
45226854 |
at-ggttaaatcgctaattcatat |
45226832 |
T |
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