View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_high_10 (Length: 482)
Name: NF14023_high_10
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Complemental strand, 31169066 - 31168612
Alignment:
| Q |
9 |
gagaagaatttgaaaccaagtgaacaatgttaggggtgcatttgacaataaatccaaaaataataacaaatttgatttacactttgcaaggatcatctta |
108 |
Q |
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| T |
31169066 |
gagaagaatttgaaaccgagtgaacaatgttaggagtgcatttgacaataaatccaaaaataataacaaatttgattaacactttgcaaggatcatctta |
31168967 |
T |
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| Q |
109 |
gaatattagtaatttgagagaagagtcttaatcatctcaccaattcagccattcggatcatgtcatgatgccctcttgaactaagggccctatagataac |
208 |
Q |
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| T |
31168966 |
gaatattagtaatttgagagaagagtcttaatcatctcaccaattcagccattcggatcatgtcatgatgccctcttgaactaagggccctatagataac |
31168867 |
T |
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| Q |
209 |
atctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttgaattccattcataaaggaaacaacgt |
308 |
Q |
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| T |
31168866 |
atctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttaaattccattcataaaggaaacaacat |
31168767 |
T |
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| Q |
309 |
taagttctgactatttttcaatgattcatttgtgttcatgcaaatatacatcataatttcttactctttgagaatatctttaagcaccgtgctcttgcca |
408 |
Q |
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| T |
31168766 |
taagttcttactatttttcaatgattcatttgtgttcatgcaaatatacataataatttcttactctttgagaatatctttaagcaccgtgctcttgcca |
31168667 |
T |
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| Q |
409 |
gctcccataccaccgcccatgaaaaggagcactgggctcctatcactgtgagcca |
463 |
Q |
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| T |
31168666 |
gctcccataccaccgcccatgaaaaggagcacagggctcctatcactgtgagcca |
31168612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 456
Target Start/End: Original strand, 33303216 - 33303304
Alignment:
| Q |
368 |
cttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
456 |
Q |
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| T |
33303216 |
cttactctttaagaatgtctttaagaacactgctctttccagctcccatgccaccacccatgaacagtagcactggactcctttcactg |
33303304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 33251368 - 33251455
Alignment:
| Q |
369 |
ttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
456 |
Q |
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| T |
33251368 |
ttactctttaagaatgtctttaagaacagtgctctttccagctcccatgccaccacccatgaacagtagaactggattcctctcactg |
33251455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 33271540 - 33271627
Alignment:
| Q |
369 |
ttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
456 |
Q |
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| T |
33271540 |
ttactctttaagaatgtctttaagaacagtgctctttccagctcccatgccaccacccatgaacagtagaactggattcctctcactg |
33271627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 38627728 - 38627876
Alignment:
| Q |
167 |
catgtcatgatgccctcttgaactaagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacc |
266 |
Q |
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| T |
38627728 |
catgtcatgatggcctgttgagctaagtgccctatagatgacatctgattctttgaaggcatctgcttcaatgactactgcatttcctgatgctcctgcc |
38627827 |
T |
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| Q |
267 |
caaaaaggcctgtttgaattccattcataaaggaaacaacgttaagttct |
316 |
Q |
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| T |
38627828 |
cagaaaggtctgtttaaatttcattcataaa-gaaacaacattaggttct |
38627876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 38628500 - 38628599
Alignment:
| Q |
362 |
taatttcttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactgtgagc |
461 |
Q |
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| T |
38628500 |
taattgcttactctttgagaatatccttgagtacagtgctcttgccagctcccatacctcctcccatcagaagtaggactgggctcctatcactgtgagc |
38628599 |
T |
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