View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14023_high_18 (Length: 355)

Name: NF14023_high_18
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14023_high_18
NF14023_high_18
[»] chr7 (5 HSPs)
chr7 (52-294)||(26329432-26329674)
chr7 (187-332)||(26329821-26329966)
chr7 (1-59)||(26329290-26329348)
chr7 (52-96)||(7438671-7438715)
chr7 (66-118)||(5235929-5235981)
[»] chr6 (4 HSPs)
chr6 (58-117)||(18803567-18803626)
chr6 (67-118)||(12787743-12787794)
chr6 (52-117)||(426564-426629)
chr6 (55-103)||(23130532-23130580)
[»] chr2 (1 HSPs)
chr2 (68-117)||(15528231-15528280)
[»] chr3 (2 HSPs)
chr3 (58-117)||(10335342-10335401)
chr3 (58-119)||(24205097-24205158)
[»] scaffold0027 (1 HSPs)
scaffold0027 (52-118)||(46625-46691)
[»] chr8 (1 HSPs)
chr8 (58-96)||(4673481-4673519)
[»] chr1 (3 HSPs)
chr1 (58-103)||(13011272-13011317)
chr1 (58-99)||(15641086-15641127)
chr1 (58-118)||(47989441-47989501)
[»] scaffold0053 (1 HSPs)
scaffold0053 (58-118)||(8741-8801)
[»] chr4 (1 HSPs)
chr4 (58-118)||(19482611-19482671)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 26329432 - 26329674
Alignment:
Q  52 taactatgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagggtactacatttttctgaatatgactatggtact 151  Q
    |||| |||||||| ||||||||| ||||||||||||  ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| ||||    
T  26329432 taacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtctgtattcgtgcttcatagggtactacatttttctgaatatgactatgatact 26329531  T
Q  152 ctagttagtgtcagaggaatgtatcaatcaaagtaatgtgttgaattagcattaaattctctgaaaaccaatgtgttgatcagaattcaagtgattcatg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |      
T  26329532 ctagttagtgtcagaggaatgtatcaatcaaagtaatgtgttgaattagcattaaattctctgaaaaccaatgtgttgattagagtacaagtgatttaga 26329631  T
Q  252 tcgtttgaagttcaagtttgagtgattagaatctcgtgttctt 294  Q
    | |||  |||||||| | |||||||| |||||||| |||||||    
T  26329632 ttgttacaagttcaactgtgagtgataagaatctcatgttctt 26329674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 26329821 - 26329966
Alignment:
Q  187 atgtgttgaattagcattaaattctctgaaaaccaatgtgttgatcagaattcaagtgattcatgtcgtttgaagttcaagtttgagtgattagaatctc 286  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26329821 atgtgttgaattagcattcaattctctgaaaaccaacgtgttgatcagaattcaagtgattcatgtcgtttgaagttcaagtgtgagtgattagaatctc 26329920  T
Q  287 gtgttcttgtttgtcgtgaagtatgaagacctattagtgcacattt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26329921 gtgttcttgtttgtcgtgaagtatgaagacctattagtgcacattt 26329966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26329290 - 26329348
Alignment:
Q  1 gtttgtcatgttattcatttctctttcatcacattcatttctatatggtactaactatg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26329290 gtttgtcatgttattcatttctctttcatcacattcatttctatatggtactatctatg 26329348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 7438715 - 7438671
Alignment:
Q  52 taactatgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgt 96  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||    
T  7438715 taactgtgtcggcatgtcagtgtttatgtcgtatccgatgtccgt 7438671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 5235981 - 5235929
Alignment:
Q  66 tgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    ||||||||| |||||||||||| |||||||| |||||| |  |||||||||||    
T  5235981 tgtcagtgtctgtgtcgtgtccaatgtccgtatttgtatctgtgcttcatagg 5235929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 18803567 - 18803626
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatag 117  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||    
T  18803567 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccatgtctgtattcctgcttcatag 18803626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 12787794 - 12787743
Alignment:
Q  67 gtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    |||||||||||||||||||||| | |||||||||||  || |||||||||||    
T  12787794 gtcagtgtttgtgtcgtgtccggtatccgtgtttgtgtccatgcttcatagg 12787743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 426564 - 426629
Alignment:
Q  52 taactatgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatag 117  Q
    ||||| ||||||| |||||||||  |||||||||||| | ||||||| |||| || ||||||||||    
T  426564 taactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttcatag 426629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 23130532 - 23130580
Alignment:
Q  55 ctatgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgta 103  Q
    ||||||||||||||||||||  |||| ||||| ||||||||||| ||||    
T  23130532 ctatgtcggcatgtcagtgtcagtgttgtgtctgatgtccgtgtctgta 23130580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 15528231 - 15528280
Alignment:
Q  68 tcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatag 117  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||    
T  15528231 tcagtgtttgtgtcgtgtccaatctccgtgtttgtatccctgcttcatag 15528280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 10335342 - 10335401
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatag 117  Q
    ||||||| |||||||||  |||||||||||| |||||||||| ||| || ||||||||||    
T  10335342 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcatag 10335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 24205097 - 24205158
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcataggg 119  Q
    ||||||| |||||||||  |||||||||||| ||||||||| |||  || ||||||||||||    
T  24205097 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcataggg 24205158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 46691 - 46625
Alignment:
Q  52 taactatgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    ||||| ||||||| ||||| |||  ||||||||||||||||||||||  ||| || |||||||||||    
T  46691 taactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtccgtatccgtgcttcatagg 46625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 4673481 - 4673519
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgt 96  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  4673481 tgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgt 4673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 13011272 - 13011317
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgta 103  Q
    |||||||||||||||||| ||||||||| || ||||||||| ||||    
T  13011272 tgtcggcatgtcagtgttcgtgtcgtgttcggtgtccgtgtctgta 13011317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 15641086 - 15641127
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtt 99  Q
    |||||||||||||||||  ||||| |||||||||||||||||    
T  15641086 tgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgtt 15641127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 47989501 - 47989441
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    ||||||| ||||||||| ||||||||||| | | ||||||| |||| || |||||||||||    
T  47989501 tgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtgtctgtatccatgcttcatagg 47989441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 8801 - 8741
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    ||||||| |||||||||  |||||||||||| |||||||||  ||| || |||||||||||    
T  8801 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcatagg 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 19482671 - 19482611
Alignment:
Q  58 tgtcggcatgtcagtgtttgtgtcgtgtccgatgtccgtgtttgtacccctgcttcatagg 118  Q
    ||||||| ||||||||| ||||||||||| | |||| ||||| ||| || |||||||||||    
T  19482671 tgtcggcgtgtcagtgtctgtgtcgtgtctggtgtctgtgttcgtatccgtgcttcatagg 19482611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University