View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14023_high_26 (Length: 268)

Name: NF14023_high_26
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14023_high_26
NF14023_high_26
[»] chr8 (4 HSPs)
chr8 (1-251)||(35062110-35062360)
chr8 (127-241)||(10552047-10552162)
chr8 (25-107)||(18070497-18070579)
chr8 (127-235)||(30236292-30236400)
[»] chr7 (2 HSPs)
chr7 (133-241)||(38485342-38485450)
chr7 (127-251)||(46133456-46133580)
[»] chr6 (2 HSPs)
chr6 (128-241)||(12793894-12794007)
chr6 (128-196)||(26216140-26216207)
[»] scaffold1613 (1 HSPs)
scaffold1613 (134-237)||(1209-1312)
[»] chr3 (3 HSPs)
chr3 (127-241)||(30935579-30935694)
chr3 (127-241)||(25594708-25594822)
chr3 (133-241)||(1653076-1653183)
[»] chr1 (4 HSPs)
chr1 (133-220)||(4651573-4651660)
chr1 (134-237)||(38544930-38545033)
chr1 (133-238)||(17033370-17033475)
chr1 (133-238)||(50589397-50589502)
[»] chr4 (5 HSPs)
chr4 (133-238)||(12295959-12296064)
chr4 (151-241)||(35800293-35800383)
chr4 (139-238)||(46698976-46699075)
chr4 (165-238)||(50102351-50102424)
chr4 (133-198)||(28966671-28966736)
[»] chr5 (3 HSPs)
chr5 (138-238)||(8730706-8730806)
chr5 (138-237)||(24072459-24072558)
chr5 (193-241)||(31721522-31721570)
[»] chr2 (6 HSPs)
chr2 (138-238)||(25505101-25505201)
chr2 (127-245)||(31902598-31902715)
chr2 (168-238)||(4471743-4471813)
chr2 (138-187)||(27739766-27739815)
chr2 (140-238)||(16959818-16959916)
chr2 (175-239)||(29486957-29487021)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 35062110 - 35062360
Alignment:
Q  1 caaattactttccaactacgatgcataccaagattaaatcaatcaagcttgattcatttgcagatggaagacaaactaagaaaaaacaggaacaaaatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35062110 caaattactttccaactacgatgcataccaagattaaatcaatcgagcttgattcatttgtagatggaagacaaactaagaaaaaacaggaacaaaatac 35062209  T
Q  101 tccacactaagtaagactggattttgagggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35062210 tccacactaagtaagactggattttgagggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttgctccaccgcaag 35062309  T
Q  201 ttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattcat 251  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35062310 tcacgtcgtccgtcttacttattgtgtgctggattctgatgagccattcat 35062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 10552047 - 10552162
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagctcttttt-cctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgt 225  Q
    ||||| ||||||||||||||| |||||||| || ||| ||||| ||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  10552047 agggtgttttgagggtgtgtgtccttcgagctgcgcttttttttcctttttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgt 10552146  T
Q  226 gtgctggattctgatg 241  Q
    |||||||||| |||||    
T  10552147 gtgctggattttgatg 10552162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 18070497 - 18070579
Alignment:
Q  25 ataccaagattaaatcaatcaagcttgattcatttgcagatggaagacaaactaagaaaaaacaggaacaaaatactccacac 107  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  18070497 ataccaagattaaatcaattgagcttgattaatttgcagatggaagagagactaagaaaaaacaggaacaaaatactccacac 18070579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 30236400 - 30236292
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 226  Q
    ||||||||||||||||||||| |||||||| ||||   |||||||| |||||||||||||| ||||||||| | | | |||| |||||||||||||||||    
T  30236400 agggtattttgagggtgtgtgtccttcgagctgagtgttttttcctttttgattgatgtttgctccaccgccaatcatgtcgcccgtcttacttattgtg 30236301  T
Q  227 tgctggatt 235  Q
    || ||||||    
T  30236300 tgttggatt 30236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 38485342 - 38485450
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 232  Q
    |||| |||||||||| |||||||| |||||| |||||||  |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  38485342 ttttaagggtgtgtgtccttcgagctgagctttttttcccttttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgtgtgctgg 38485441  T
Q  233 attctgatg 241  Q
    ||| |||||    
T  38485442 attttgatg 38485450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 46133580 - 46133456
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 226  Q
    ||||| |||||| | |||||| |||||||| |||||| |||||||  |||||||||||||| ||| || |||||| |||| ||  ||||| ||||| |||    
T  46133580 agggtgttttgaagatgtgtgtccttcgagatgagctttttttcccttttgattgatgtttgctcaactgcaagtcacgttgttggtcttgcttatagtg 46133481  T
Q  227 tgctggattctgatgagccattcat 251  Q
    ||||||||||||||| |||| ||||    
T  46133480 tgctggattctgatgggccagtcat 46133456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 12793894 - 12794007
Alignment:
Q  128 gggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| | | ||| |  ||||||||||||||||    
T  12793894 gggtgttttgagggtgtgtgtccttcgagttgagctttttttcctttttgattgatatttgctccacctcaaatcatgtcatttgtcttacttattgtgt 12793993  T
Q  228 gctggattctgatg 241  Q
    ||||||||||||||    
T  12793994 gctggattctgatg 12794007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 26216207 - 26216140
Alignment:
Q  128 gggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccg 196  Q
    |||| |||||||||||||||  ||| ||| |||||| |||||||| |||||||||||||| ||||||||    
T  26216207 gggtgttttgagggtgtgtgttctttgagctgagct-tttttcctttttgattgatgtttgctccaccg 26216140  T

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Target: scaffold1613 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 1312 - 1209
Alignment:
Q  134 tttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgga 233  Q
    |||||||||||||| |||||||| |||||  |||||||| |||||||||||||| | ||||||||| | | |||||  ||||||| ||||||||||||||    
T  1312 tttgagggtgtgtgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctgga 1213  T
Q  234 ttct 237  Q
    ||||    
T  1212 ttct 1209  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 30935694 - 30935579
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagct-ctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgt 225  Q
    ||||| |||||| |||||||| |||||||| |||||| ||||||||| | |||||| ||||| ||| ||||||| | | ||| |||||||||||| ||||    
T  30935694 agggtgttttgaaggtgtgtgtccttcgagctgagcttctttttcctttgtgattgttgtttgctcaaccgcaaatcatgtcatccgtcttacttgttgt 30935595  T
Q  226 gtgctggattctgatg 241  Q
    ||||||||||||||||    
T  30935594 gtgctggattctgatg 30935579  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 25594822 - 25594708
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 226  Q
    ||||| ||||||||||| ||| |||| ||| ||| |  |||||||| |||||||||||||| | |||||||   | | |||||| ||||||||||||||     
T  25594822 agggtgttttgagggtgcgtgtcctttgagctgaacattttttcctttttgattgatgtttgcaccaccgcttttcatgtcgtctgtcttacttattgta 25594723  T
Q  227 tgctggattctgatg 241  Q
    |||||||||||||||    
T  25594722 tgctggattctgatg 25594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 1653183 - 1653076
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 232  Q
    |||||||||||| || | ||| || |||||| |||||||| ||||| |||||||| ||| | ||||| | | |  ||| ||||||||||||||||||||     
T  1653183 ttttgagggtgtctgtcattcaagctgagct-tttttcctttttgactgatgtttgctctatcgcaaatcatgctgtctgtcttacttattgtgtgctga 1653085  T
Q  233 attctgatg 241  Q
    |||||||||    
T  1653084 attctgatg 1653076  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 4651573 - 4651660
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttactt 220  Q
    ||||||||||||||| |||||||| |||| | |||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||    
T  4651573 ttttgagggtgtgtgtccttcgagctgagatttttttccttttcgattgatgtttgctccaccgcaagtcacgtcgtctgtcttactt 4651660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 38545033 - 38544930
Alignment:
Q  134 tttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgga 233  Q
    |||||||||||||| |||||||| |||||  |||||||| |||||||||||||| | ||||||||| | | |||||  ||||||| ||||||||||||||    
T  38545033 tttgagggtgtgtgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctgga 38544934  T
Q  234 ttct 237  Q
    ||||    
T  38544933 ttct 38544930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 17033370 - 17033475
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 232  Q
    |||||||||||| || |||||||| |||||  |||||||| |||||||||||||| | ||||| ||| |   |||||  |||||||||||||||||||||    
T  17033370 ttttgagggtgtatgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccacaaatcttgtcgtttgtcttacttattgtgtgctgg 17033469  T
Q  233 attctg 238  Q
    ||||||    
T  17033470 attctg 17033475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 50589502 - 50589397
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 232  Q
    ||||||||||||||| | ||| || | |||| || ||||| ||| |||||||||| | ||||||||| | | || ||  ||||||| |||||||||||||    
T  50589502 ttttgagggtgtgtgtcattctagcttagcttttgttccttttttattgatgtttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctgg 50589403  T
Q  233 attctg 238  Q
    ||||||    
T  50589402 attctg 50589397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 12295959 - 12296064
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 232  Q
    ||||||||||  ||| |||||||| |||||  |||||||| |||||| ||||||| | ||||||||| ||  |||||| ||||||| |||||||||||||    
T  12295959 ttttgagggtacgtgtccttcgagctgagcattttttcctttttgatcgatgtttgcaccaccgcaaatttagtcgtctgtcttacatattgtgtgctgg 12296058  T
Q  233 attctg 238  Q
    ||||||    
T  12296059 attctg 12296064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 35800293 - 35800383
Alignment:
Q  151 ttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatg 241  Q
    |||||| |||||| |||| ||| ||||| ||||| || ||||||||||| | | |||||| ||||||||||||||||| ||||||||||||    
T  35800293 ttcgagctgagcttttttccctttttgagtgatgattgctccaccgcaaatcatgtcgtctgtcttacttattgtgtgttggattctgatg 35800383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 46699075 - 46698976
Alignment:
Q  139 gggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 238  Q
    ||||||||| |||||||| |||||  ||||| || |||||||||||||| | |||| |||| ||  ||  || ||||||| |||||||||||||||||||    
T  46699075 gggtgtgtgtccttcgagctgagcattttttactttttgattgatgtttgcaccactgcaaattttgtattctgtcttacatattgtgtgctggattctg 46698976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 50102351 - 50102424
Alignment:
Q  165 tttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 238  Q
    ||||| || |||||||||||||| | |||||| || ||  |||||| ||||||| |||||||||||||||||||    
T  50102351 ttttttctttttgattgatgtttgcaccaccgtaaattttgtcgtctgtcttacatattgtgtgctggattctg 50102424  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 28966671 - 28966736
Alignment:
Q  133 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgca 198  Q
    ||||||||||||||| ||||||||  ||||  || ||||| |||||||||||||| | ||||||||    
T  28966671 ttttgagggtgtgtgtccttcgagccgagcatttgttcctttttgattgatgtttgcaccaccgca 28966736  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 8730706 - 8730806
Alignment:
Q  138 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 237  Q
    |||||| ||| |||| ||| |||||| |||||||| |||||||||||||| | |||||| || |   || ||| ||||||||||||||||||||||||||    
T  8730706 agggtgagtgtccttagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattct 8730805  T
Q  238 g 238  Q
    |    
T  8730806 g 8730806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 24072558 - 24072459
Alignment:
Q  138 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 237  Q
    |||||| ||| ||||||||||||||  |||||||||||||||||||||||    ||||| || | | |||||| ||||||| | ||||||||||||||||    
T  24072558 agggtgcgtgtccttcgagttgagcattttttcctatttgattgatgtttttatcaccgtaaatcatgtcgtctgtcttacatgttgtgtgctggattct 24072459  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 31721522 - 31721570
Alignment:
Q  193 accgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatg 241  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||||||||    
T  31721522 accgcaagtcacgtcgtctgtcttacttattgtgttatggattctgatg 31721570  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 25505201 - 25505101
Alignment:
Q  138 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 237  Q
    |||||| ||| |||| ||| |||||| |||||||| |||||||||||||| | |||||| || |   || ||| ||||||||||||||||||||||||||    
T  25505201 agggtgagtgtccttagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattct 25505102  T
Q  238 g 238  Q
    |    
T  25505101 g 25505101  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 31902715 - 31902598
Alignment:
Q  127 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgttta-ctccaccgcaagttacgtcgtccgtcttacttattgt 225  Q
    ||||| ||||||||||||||  |||||||| |||||| ||||||||  ||||||| |||||  ||| ||| | ||| |||| ||| ||||| ||||| ||    
T  31902715 agggtgttttgagggtgtgtctccttcgagctgagctttttttcct--ttgattgttgttttgctctaccactagtcacgtggtcggtcttgcttatagt 31902618  T
Q  226 gtgctggattctgatgagcc 245  Q
    ||||||||||||||||||||    
T  31902617 gtgctggattctgatgagcc 31902598  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 4471743 - 4471813
Alignment:
Q  168 ttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 238  Q
    ||||| |||||||||||||| | ||||||||| ||  |||||| ||||||||||||||||| |||||||||    
T  4471743 ttcctttttgattgatgtttgcaccaccgcaaattttgtcgtcagtcttacttattgtgtgatggattctg 4471813  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 27739766 - 27739815
Alignment:
Q  138 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgttt 187  Q
    ||||||||||  |||||||||||||| |||||||| ||||||||||||||    
T  27739766 agggtgtgtgttcttcgagttgagctttttttcctttttgattgatgttt 27739815  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 16959818 - 16959916
Alignment:
Q  140 ggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 238  Q
    |||||||| | ||| || |||||| || ||||| |||||||||| ||| | ||||||||| | | || ||  ||||||| |||||||||||||||||||    
T  16959818 ggtgtgtgtcattctagctgagcttttgttcctttttgattgatatttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctg 16959916  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 29486957 - 29487021
Alignment:
Q  175 ttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctga 239  Q
    ||||||||||||| | ||||||||| | | || ||| || |||||| ||||||||||||||||||    
T  29486957 ttgattgatgtttgcaccaccgcaattcatgttgtctgttttacttgttgtgtgctggattctga 29487021  T

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