View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_high_38 (Length: 233)
Name: NF14023_high_38
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 10715984 - 10715828
Alignment:
| Q |
17 |
aatatctacttctaggtatggcctcagagactactataaaatttgaaaaacataaactccataaaatatggtgatatagaactaaaaaattcacacaatt |
116 |
Q |
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| T |
10715984 |
aatatctacttctaggtatggcctcagagacta---taaaatttgaaaaacataaactccataaaatatggtgatatagaactaaaaaattcacacaatt |
10715888 |
T |
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| Q |
117 |
ataacagcatggtttatatgcataaacggttgaaacataatacatatatattcactgtag |
176 |
Q |
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| T |
10715887 |
ataacagcatggtttatatgcatacacggttgaaacataatacatatatattcactgtag |
10715828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 10715396 - 10715363
Alignment:
| Q |
177 |
aagtttcaaattgttttaaaaaatatcctgattg |
210 |
Q |
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| T |
10715396 |
aagtttcaaattgttttaaaaaatatcctgattg |
10715363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 12151008 - 12151081
Alignment:
| Q |
23 |
tacttctaggtatggcctcagagactactataaaatttgaaaaacataaactccataaaatatggtgatatagaa |
97 |
Q |
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| T |
12151008 |
tacttctgggtatggtctgagagactactacaaa-ttcgaaaaacataaacttcataaaagatcgtgatatagaa |
12151081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 39212501 - 39212469
Alignment:
| Q |
73 |
ctccataaaatatggtgatatagaactaaaaaa |
105 |
Q |
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| T |
39212501 |
ctccataaaatatggtgatatagaactaaaaaa |
39212469 |
T |
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