View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_high_41 (Length: 224)
Name: NF14023_high_41
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1101507 - 1101700
Alignment:
| Q |
18 |
caagaaaagcatggagtgcgttttcggattagttggtaatggtttcgcaatcgtggtggctgatacatcggcggttcacagcatcctcgttcacaaatcc |
117 |
Q |
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| T |
1101507 |
caagaaaagcatggagtgcgttttcggattagttggtaatggtttcgcaatcgtggtggctgatacatcggcggttcacagcatcctcgttcacaaatcc |
1101606 |
T |
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| Q |
118 |
aacgaagacaagatcatgttcctcgattcacacaaactcatcgctgctagcggtgaacccggtgacaggtttcactctcttccatcttcatctc |
211 |
Q |
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| T |
1101607 |
aacgaagacaagatcatgttcctcgattcacacaaactcatcgctgctagcggtgaacccggtgacaggtttcaatctctttcatcttcttctc |
1101700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 3734086 - 3734256
Alignment:
| Q |
27 |
catggagtgcgttttcggattagttggtaatggtttcgcaatcgtggtggctgatacatcggcggttcacagcatcctcgttcacaaatccaacgaagac |
126 |
Q |
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|||||| || || ||||||||||| || | || |||||| ||||| || ||||||||||| || || |||||||||||||| ||||||||||| |||||| |
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| T |
3734086 |
catggaatgtgtattcggattagtaggaactgatttcgccatcgtagtagctgatacatcagcagtacacagcatcctcgtacacaaatccaatgaagac |
3734185 |
T |
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| Q |
127 |
aagatcatgttcctcgattcacacaaactcatcgctgctagcggtgaacccggtgacaggtttcactctct |
197 |
Q |
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| T |
3734186 |
aagatcatgttcctcgattcccacaaactcgttgctgctagcggagaacccggtgacaggtttcattctct |
3734256 |
T |
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