View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_high_5 (Length: 561)
Name: NF14023_high_5
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Original strand, 53005458 - 53006010
Alignment:
| Q |
19 |
gttatttgtgcagtatgtctgccattgcggcg--------tctgatgttttttatttattcataatgcctattatatgtttggtacttgacattgtacat |
110 |
Q |
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| T |
53005458 |
gttatttgtgcagtatgtctgccattgcggcgattttcaatctgatgttttttatttattcataatgcctattatatgtttggtacttgacattgtacat |
53005557 |
T |
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| Q |
111 |
gattacacagccttattttttatctcattctttattacatacatctacactggtatcactacttcgtatcgttaagtatagctaatttcctaaatctctg |
210 |
Q |
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| T |
53005558 |
gattacacaaccttattttt-atctcattgtttattaca----tctacactggtatcactacttcgtatcgttaagtatagctaatttactaaatctctg |
53005652 |
T |
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| Q |
211 |
tgaagcgataactgacaagatattttcgttgcaacatactctattaaacgagtggaagaagcatcagattaaaaccttacactgcaactcattgtatcta |
310 |
Q |
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| T |
53005653 |
tgaagcgataactgacaagatattttcgttgcaacatactctattaaacgagtggaagaagcatcagattaaaaccttacactgcaactcattgtatcta |
53005752 |
T |
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| Q |
311 |
ctaaatgcttggaaactatgttaattatgcaatcagttcagcttctgttttgaagtttggtgaccgttaaaccatgtagttacagtgcacataatatttg |
410 |
Q |
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| T |
53005753 |
ctaaatgcttggaaactatgttaattatgcaatcagttcagcttctgttttgaagtttggtgaccgttaaaccatgtagttacagtgcacatagtatttg |
53005852 |
T |
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| Q |
411 |
ctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactg--------------atcattccgagcaacc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53005853 |
ctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactgatctctgttatgttatcattccgagcaacc |
53005952 |
T |
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| Q |
497 |
ttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttcatatc |
554 |
Q |
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| T |
53005953 |
ttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttcctatc |
53006010 |
T |
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