View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14023_high_9 (Length: 493)
Name: NF14023_high_9
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_high_9 |
 | |
|
| [»] scaffold1207 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 11196133 - 11196594
Alignment:
| Q |
17 |
caaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196133 |
caaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatac |
11196232 |
T |
|
| Q |
117 |
atgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196233 |
atgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgac |
11196332 |
T |
|
| Q |
217 |
aatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196333 |
aatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgc |
11196432 |
T |
|
| Q |
317 |
ataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196433 |
ataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtc |
11196532 |
T |
|
| Q |
417 |
catcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196533 |
catcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
11196594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 11155686 - 11156141
Alignment:
| Q |
17 |
caaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatac |
116 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155686 |
caaattttccaagcaagttgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatac |
11155785 |
T |
|
| Q |
117 |
atgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155786 |
atgttccattttggcaggaattttggtattcctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgac |
11155885 |
T |
|
| Q |
217 |
aatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgc |
316 |
Q |
| |
|
||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155886 |
aattgtaaatctt------tctcactacactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgc |
11155979 |
T |
|
| Q |
317 |
ataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155980 |
ataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtc |
11156079 |
T |
|
| Q |
417 |
catcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156080 |
catcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
11156141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 35 - 478
Target Start/End: Original strand, 11160566 - 11161008
Alignment:
| Q |
35 |
tgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
134 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11160665 |
T |
|
| Q |
135 |
aattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
234 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160666 |
aattttggtattcctagggattattgtgttcataatccccccc-gagtctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
11160764 |
T |
|
| Q |
235 |
ttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccga |
334 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160765 |
ttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgccactgcctcatcgacattgatgcttttgcataaaagcttccccccga |
11160864 |
T |
|
| Q |
335 |
agaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160865 |
agaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattat |
11160964 |
T |
|
| Q |
435 |
acacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11160965 |
acacttttctacaatctccatgcacttgtcgaagtgattcttgt |
11161008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 35 - 478
Target Start/End: Original strand, 11199147 - 11199584
Alignment:
| Q |
35 |
tgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
134 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11199246 |
T |
|
| Q |
135 |
aattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
234 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11199247 |
aattttggtattcctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatctt----- |
11199341 |
T |
|
| Q |
235 |
ttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccga |
334 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199342 |
-tctcactacactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccga |
11199440 |
T |
|
| Q |
335 |
agaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199441 |
agaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattat |
11199540 |
T |
|
| Q |
435 |
acacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11199541 |
acacttttctacaatctccatgcacttgtcgaagtgattcttgt |
11199584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 182 - 478
Target Start/End: Complemental strand, 11242016 - 11241720
Alignment:
| Q |
182 |
tctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgcc |
281 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11242016 |
tctccaatccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgcc |
11241917 |
T |
|
| Q |
282 |
atatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccg |
381 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11241916 |
atatgccacagcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagcca |
11241817 |
T |
|
| Q |
382 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241816 |
ccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
11241720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 11132404 - 11132865
Alignment:
| Q |
17 |
caaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatac |
116 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||| || ||||| || ||||||| ||| | |||||| ||||||| || | |||||| |||||||| |
|
|
| T |
11132404 |
caaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatac |
11132503 |
T |
|
| Q |
117 |
atgttccattttggcaggaattttggtattcctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgac |
216 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||| || ||| || ||| || |||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
11132504 |
ttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctccaatccaagggataaaggaatgacctccctc |
11132603 |
T |
|
| Q |
217 |
aatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgc |
316 |
Q |
| |
|
|| | ||| | |||||| |||||||| |||||| ||||||| || |||||||||||||| ||| |||| | || ||||| |||| |||||||||| |
|
|
| T |
11132604 |
gatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgc |
11132703 |
T |
|
| Q |
317 |
ataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtc |
416 |
Q |
| |
|
|||| ||| || | ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11132704 |
ataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaatactactcttgtc |
11132803 |
T |
|
| Q |
417 |
catcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
|| ||| ||||| |||| |||||||||| |||||||||| ||||||| ||||||||| |||| |
|
|
| T |
11132804 |
caacccgctatctattagacacttttccgcaatctccatacacttgttgaagtgattattgt |
11132865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 251 - 461
Target Start/End: Complemental strand, 11315257 - 11315047
Alignment:
| Q |
251 |
cactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccat |
350 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |||| | || |||||| |||| | |
|
|
| T |
11315257 |
cactcaacatagcagcgtggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccacttaaacg |
11315158 |
T |
|
| Q |
351 |
ttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatc |
450 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| || ||||||||| |||||| |
|
|
| T |
11315157 |
tcgatgcagctttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatc |
11315058 |
T |
|
| Q |
451 |
tccatgcactt |
461 |
Q |
| |
|
| ||||||||| |
|
|
| T |
11315057 |
ttcatgcactt |
11315047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 189 - 460
Target Start/End: Original strand, 11208959 - 11209245
Alignment:
| Q |
189 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc |
288 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || ||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11208959 |
tccaagggacaaaggattgacttccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgca |
11209058 |
T |
|
| Q |
289 |
accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag |
373 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| | |||| | | ||||||||| ||| | ||||||||||||||||||||| | |
|
|
| T |
11209059 |
actgcctcatctgcattgatgcttttacataactccgtcccactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctgg |
11209158 |
T |
|
| Q |
374 |
tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcact |
460 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
11209159 |
tagacccgccaacaagcacaacatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcact |
11209245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 189 - 459
Target Start/End: Original strand, 11170137 - 11170422
Alignment:
| Q |
189 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc |
288 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11170137 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgca |
11170236 |
T |
|
| Q |
289 |
accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag |
373 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||| | |||| | | ||||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
11170237 |
accgcctcatctacattgatgtttttacataactccgtcccactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctgg |
11170336 |
T |
|
| Q |
374 |
tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac |
459 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| | ||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
11170337 |
tagagccgccaacaagcacaacatcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcac |
11170422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 460
Target Start/End: Original strand, 11275701 - 11275807
Alignment:
| Q |
354 |
ttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctcc |
453 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
11275701 |
ttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttcc |
11275800 |
T |
|
| Q |
454 |
atgcact |
460 |
Q |
| |
|
||||||| |
|
|
| T |
11275801 |
atgcact |
11275807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 11275555 - 11275652
Alignment:
| Q |
223 |
aaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa |
320 |
Q |
| |
|
|||||||||| ||| |||| || |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
11275555 |
aaatcttgaaacttttcacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa |
11275652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 478
Target Start/End: Original strand, 11199708 - 11199759
Alignment:
| Q |
427 |
tcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgt |
478 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
11199708 |
tcaattatacacttttctacaatctccatgcacttgtcgaagtcattcttgt |
11199759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 11169972 - 11170021
Alignment:
| Q |
24 |
tcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
73 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11169972 |
tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
11170021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 11275355 - 11275402
Alignment:
| Q |
23 |
ttcctagcaagttgttgtccctagttattttcctctcaccttcataaa |
70 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
11275355 |
ttcctagcaagttgttgtccttagttgttttcctctcaccctcataaa |
11275402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 11319849 - 11319803
Alignment:
| Q |
223 |
aaatcttgaaccttctcactaaactcaccactcaatatagaagcatg |
269 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
11319849 |
aaatcttgaaacttttcacaaaactcaccactcaatatagaagcatg |
11319803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 11208794 - 11208841
Alignment:
| Q |
24 |
tcctagcaagttgttgtccctagttattttcctctcaccttcataaac |
71 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
11208794 |
tcctagcaagttgttgtccttagttgtttgcctctcaccctcataaac |
11208841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 358 - 460
Target Start/End: Original strand, 639 - 741
Alignment:
| Q |
358 |
acttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgc |
457 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||| ||||| ||| ||||||||| |
|
|
| T |
639 |
acttttacaatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgc |
738 |
T |
|
| Q |
458 |
act |
460 |
Q |
| |
|
||| |
|
|
| T |
739 |
act |
741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 546 - 586
Alignment:
| Q |
280 |
ccatatgccaccgcctcatcgacattgatgcttttgcataa |
320 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
546 |
ccatatgcaaccgcctcatctgcattgatgcttttgcataa |
586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 460
Target Start/End: Original strand, 17260000 - 17260094
Alignment:
| Q |
366 |
aatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcact |
460 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||| ||| || |||||||| ||| || |||| | | |||||| || |||||||||||||||| |
|
|
| T |
17260000 |
aatcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaacaatctccatgcact |
17260094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 27831284 - 27831230
Alignment:
| Q |
366 |
aatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatc |
420 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27831284 |
aatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatc |
27831230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University