View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14023_low_1 (Length: 699)
Name: NF14023_low_1
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 29594868 - 29594462
Alignment:
| Q |
1 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaatgtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
29594868 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaatgtgg |
29594769 |
T |
|
| Q |
101 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
29594768 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaaccaatc |
29594669 |
T |
|
| Q |
201 |
ctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttatttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29594668 |
ctttgataaaattagtgtgattgaaaaagcttataaaaaatcttacaaggtgttcaagatcaaactggtggtatattaacgttaatatctttgttatttt |
29594569 |
T |
|
| Q |
301 |
ggttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
29594568 |
agttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatggcaa |
29594469 |
T |
|
| Q |
401 |
gaagaat |
407 |
Q |
| |
|
||||||| |
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|
| T |
29594468 |
gaagaat |
29594462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 11353683 - 11353611
Alignment:
| Q |
5 |
tgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||| ||||||||||| |
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|
| T |
11353683 |
tgttaaataagaaaatagagggggtgtctgtgtcatttaacgagaccttaagggaggtgaacgtatttttccc |
11353611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 52077761 - 52077355
Alignment:
| Q |
1 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaatgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
52077761 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcttttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaatgtgg |
52077662 |
T |
|
| Q |
101 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || |
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|
| T |
52077661 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaaccagtc |
52077562 |
T |
|
| Q |
201 |
ctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttatttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52077561 |
atttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttatttt |
52077462 |
T |
|
| Q |
301 |
ggttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
52077461 |
agttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacgccaaattagtggagaatggcaa |
52077362 |
T |
|
| Q |
401 |
gaagaat |
407 |
Q |
| |
|
||||||| |
|
|
| T |
52077361 |
gaagaat |
52077355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 29058510 - 29058916
Alignment:
| Q |
1 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaatgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||| |
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|
| T |
29058510 |
tcaatgttaaataagaaaatagtgggggtgtctgtgtcatttaaagagacctcaagagagattaatgtatttttctcaaacctctgtaattagaatgtgg |
29058609 |
T |
|
| Q |
101 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatc |
200 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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|
| T |
29058610 |
gaagcttaaatattttcagatatgatgaaaccttgtaaataaaatagaagactgagttgcaagatctgctctcttaaatttgtgtaatgcaaagccagtc |
29058709 |
T |
|
| Q |
201 |
ctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttatttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
29058710 |
ctttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactagtggtatattgatgttaatatctttgttatttt |
29058809 |
T |
|
| Q |
301 |
ggttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
29058810 |
agttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacttcaaattactggagaatggcaa |
29058909 |
T |
|
| Q |
401 |
gaagaat |
407 |
Q |
| |
|
||||||| |
|
|
| T |
29058910 |
gaagaat |
29058916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 52088563 - 52088298
Alignment:
| Q |
1 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaaacctctttaatgagaatgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52088563 |
tcaatgttaaataagaaaatagagggggtgtctgtgtcgtttaaagagacctcaagggagatgaatgtatttttcccaaacctctttaattagaatgtgg |
52088464 |
T |
|
| Q |
101 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |
|
|
| T |
52088463 |
gaagcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagacctgccctcttaaatttgtgtaatgcaaaaccagtc |
52088364 |
T |
|
| Q |
201 |
ctttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaact |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52088363 |
atttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaact |
52088298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 29059084 - 29059168
Alignment:
| Q |
404 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcac |
488 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccataatagaaaacaacgctcctttcatatgctaaacttcac |
29059168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 489
Target Start/End: Complemental strand, 52077187 - 52077102
Alignment:
| Q |
404 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcacc |
489 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||| |
|
|
| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccatcatgggaaataactctcctttcccatgttaaactccacc |
52077102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 43898996 - 43899059
Alignment:
| Q |
16 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttcccaa |
79 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| |||||||| || ||||||||| |
|
|
| T |
43898996 |
aaaatagagggggtgtgagttacatttcaagagacctcaagggagatgaatatagttttcccaa |
43899059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 136 - 375
Target Start/End: Original strand, 51288555 - 51288793
Alignment:
| Q |
136 |
taaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcctttgataaaattagtgtgattgaaaaagcttatc |
235 |
Q |
| |
|
|||||||||||||| | |||||| ||| | |||||||||||||||| | || |||||||| ||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
51288555 |
taaataaaatagaaaattgagtttcaaattccgctctcttaaatttgtatgatccaaaaccagtccctttataaa-ttagtgtgattgaaaaagcttatg |
51288653 |
T |
|
| Q |
236 |
aaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttggttttgtttgtgttcattggga-tttttatcatc |
334 |
Q |
| |
|
|||||| |||||||||||| ||||||| || ||| | ||||| |||||| |||||||| |||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
51288654 |
aaaaattttacaaggtgttaaagatcacaccggtag-atattgatgttagtatctttgctattttagttttgtttgtgttcagtgggattttttatcatt |
51288752 |
T |
|
| Q |
335 |
agaagctcttgcaaaacttatacacatatcagataaccttc |
375 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
51288753 |
aggagctcttgcaaaatttatacccatatcagataaccttc |
51288793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 12142073 - 12142133
Alignment:
| Q |
16 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
77 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
12142073 |
aaaatagagggg-tgtcggcgtcatttaaagagacctcaagggagatgagtgtatttttccc |
12142133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 44539564 - 44539625
Alignment:
| Q |
16 |
aaaatagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
77 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||| || || |||||||||||||||| |
|
|
| T |
44539564 |
aaaatagagggggtgtctctgtcatttaaagaaaactcaggggaggtgaatgtatttttccc |
44539625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24153249 - 24153192
Alignment:
| Q |
20 |
tagagggggtgtctgtgtcatttaaagagacctcaaggaagatgaatgtatttttccc |
77 |
Q |
| |
|
||||| |||||||||| |||||| || |||||||||||||| ||| |||| ||||||| |
|
|
| T |
24153249 |
tagagtgggtgtctgtctcattttaatagacctcaaggaaggtgagtgtaattttccc |
24153192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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