View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14023_low_10 (Length: 511)

Name: NF14023_low_10
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14023_low_10
NF14023_low_10
[»] chr3 (18 HSPs)
chr3 (1-174)||(48162218-48162392)
chr3 (1-164)||(45032192-45032355)
chr3 (177-389)||(18912112-18912337)
chr3 (4-111)||(18945440-18945547)
chr3 (247-389)||(18942602-18942744)
chr3 (172-389)||(45034964-45035186)
chr3 (10-98)||(183074-183162)
chr3 (276-389)||(52560284-52560397)
chr3 (311-389)||(44846958-44847036)
chr3 (85-174)||(182980-183070)
chr3 (262-382)||(48165206-48165326)
chr3 (313-389)||(23585478-23585553)
chr3 (313-389)||(23600301-23600376)
chr3 (128-174)||(18945378-18945424)
chr3 (286-388)||(18878733-18878837)
chr3 (119-174)||(18896182-18896237)
chr3 (311-389)||(38108774-38108852)
chr3 (172-213)||(48165099-48165140)
[»] chr7 (25 HSPs)
chr7 (287-497)||(46525963-46526155)
chr7 (172-389)||(6272450-6272679)
chr7 (1-174)||(46528621-46528811)
chr7 (175-272)||(46526144-46526241)
chr7 (172-389)||(42014432-42014654)
chr7 (247-389)||(45075210-45075352)
chr7 (1-83)||(34195412-34195494)
chr7 (276-387)||(41957697-41957808)
chr7 (10-156)||(1804269-1804414)
chr7 (33-108)||(41958438-41958512)
chr7 (85-174)||(34198770-34198860)
chr7 (431-482)||(46522031-46522082)
chr7 (79-160)||(13952655-13952736)
chr7 (306-369)||(6322570-6322633)
chr7 (311-389)||(10555072-10555150)
chr7 (286-387)||(10552700-10552801)
chr7 (313-389)||(20708209-20708285)
chr7 (313-389)||(20876253-20876329)
chr7 (341-389)||(39881343-39881391)
chr7 (58-108)||(11409081-11409130)
chr7 (175-225)||(45415361-45415411)
chr7 (311-389)||(47317784-47317862)
chr7 (324-389)||(3615332-3615397)
chr7 (119-163)||(31593345-31593389)
chr7 (341-389)||(42013600-42013648)
[»] chr5 (10 HSPs)
chr5 (1-174)||(9041576-9041749)
chr5 (22-174)||(23063099-23063268)
chr5 (10-156)||(19871189-19871334)
chr5 (311-389)||(34394182-34394260)
chr5 (330-389)||(10825308-10825367)
chr5 (249-354)||(34394016-34394122)
chr5 (245-297)||(10825426-10825478)
chr5 (311-393)||(9042440-9042521)
chr5 (245-294)||(7263287-7263336)
chr5 (345-389)||(7263380-7263424)
[»] chr2 (13 HSPs)
chr2 (1-158)||(4172219-4172383)
chr2 (3-95)||(40614003-40614094)
chr2 (245-387)||(26394110-26394252)
chr2 (311-389)||(31500782-31500860)
chr2 (87-174)||(40613732-40613819)
chr2 (311-389)||(2119447-2119525)
chr2 (326-386)||(4425883-4425943)
chr2 (245-321)||(13331822-13331898)
chr2 (172-230)||(26394032-26394090)
chr2 (311-389)||(28654700-28654778)
chr2 (58-108)||(26172157-26172206)
chr2 (245-297)||(19508897-19508949)
chr2 (254-298)||(37313308-37313352)
[»] chr1 (12 HSPs)
chr1 (254-388)||(18239454-18239588)
chr1 (1-174)||(42057630-42057821)
chr1 (245-389)||(27105629-27105774)
chr1 (312-389)||(42463203-42463280)
chr1 (252-389)||(31387893-31388030)
chr1 (245-389)||(4911556-4911700)
chr1 (245-297)||(36354640-36354692)
chr1 (119-174)||(18240473-18240528)
chr1 (119-174)||(27108409-27108464)
chr1 (324-389)||(12789647-12789712)
chr1 (245-330)||(45475460-45475545)
chr1 (245-297)||(22093379-22093431)
[»] chr6 (6 HSPs)
chr6 (245-389)||(5620689-5620833)
chr6 (245-389)||(31860641-31860786)
chr6 (51-108)||(5614578-5614634)
chr6 (120-174)||(1259362-1259416)
chr6 (172-230)||(2946414-2946472)
chr6 (10-69)||(19272993-19273052)
[»] chr4 (7 HSPs)
chr4 (1-157)||(31302977-31303150)
chr4 (285-389)||(54602329-54602433)
chr4 (245-389)||(12024503-12024647)
chr4 (10-156)||(39390102-39390246)
chr4 (311-389)||(2333824-2333902)
chr4 (309-388)||(15502808-15502887)
chr4 (335-389)||(40729931-40729985)
[»] chr8 (11 HSPs)
chr8 (269-389)||(40494037-40494157)
chr8 (10-108)||(8318856-8318953)
chr8 (172-389)||(41270158-41270380)
chr8 (266-389)||(20495488-20495610)
chr8 (85-174)||(41267501-41267591)
chr8 (311-389)||(8316235-8316313)
chr8 (245-389)||(45120658-45120802)
chr8 (63-98)||(41267462-41267497)
chr8 (311-388)||(20477180-20477257)
chr8 (309-389)||(6253304-6253384)
chr8 (309-389)||(42095413-42095493)
[»] scaffold0184 (1 HSPs)
scaffold0184 (254-369)||(28597-28707)
[»] scaffold0078 (1 HSPs)
scaffold0078 (254-369)||(44137-44247)
[»] scaffold0916 (1 HSPs)
scaffold0916 (79-174)||(1027-1122)
[»] scaffold1043 (1 HSPs)
scaffold1043 (335-389)||(2606-2660)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 48162218 - 48162392
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtcc 100  Q
    ||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48162218 tcattttttatatgttacatgttacttggttggatttttatgctatgttaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtcc 48162317  T
Q  101 acttatttgtg-nnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  48162318 acttatttgtgttttttttaaatttgttttgaacagatatggctagggacgaggaggagcggcagcgggttatta 48162392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 45032192 - 45032355
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtcc 100  Q
    ||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45032192 tcattttttatatgttacatgttacttggttggatttttatgctatgttaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtcc 45032291  T
Q  101 acttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcag 164  Q
    |||||||||||       |||||||||||||||||||||||| ||||||||||| |||| ||||    
T  45032292 acttatttgtgtttttttaaatttgttttgaacagatatggccagggacgaggaggagcggcag 45032355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 177 - 389
Target Start/End: Original strand, 18912112 - 18912337
Alignment:
Q  177 ttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcagagtgca-------------ctggtgtgaacgatagtt 263  Q
    |||||||||||||||||||||||| | |||||||||| ||| ||||| |||||||||||||| ||||||             |||||||||||   ||||    
T  18912112 ttaatttccaattggatgcaaaaacatgccaaagttcctggaaaaacaagtgcactagtgcaaagtgcattggttctgttaactggtgtgaacagcagtt 18912211  T
Q  264 aactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatga 363  Q
    ||||||||||  || |||| ||||||||||  ||  ||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||  |||||||    
T  18912212 aactgccgctcgtgtcagcggttgttaactatcgacgtaacattgagcggtagttaacggccgctggaggcattttagtattttacttgtgtcaatatga 18912311  T
Q  364 agttttcattgtcagaaaagcaattt 389  Q
    | |||||| |||||||||||||||||    
T  18912312 aattttcactgtcagaaaagcaattt 18912337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 18945547 - 18945440
Alignment:
Q  4 ttttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccact 103  Q
    |||| |||||||| ||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18945547 ttttttatatgttacatgttacttggttggatttttatgctatgttaaatgtcttaaaagtatatagtttttaaggaaatgcttaaatacattgtccgct 18945448  T
Q  104 tatttgtg 111  Q
    ||||||||    
T  18945447 tatttgtg 18945440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 247 - 389
Target Start/End: Complemental strand, 18942744 - 18942602
Alignment:
Q  247 tggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattt 346  Q
    |||| |||||| ||||||||| |||||| ||||||| |||||||||||| || ||| ||||||||  ||||||||||||||| |||| ||||  ||||||    
T  18942744 tggtatgaacggtagttaacttccgctggtgccagcggttgttaactgctggcgtatcattgagcttttgttaacggccgttaggggcatttgcgtattt 18942645  T
Q  347 tacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||  |||| ||| ||||||||||||||||| ||||||    
T  18942644 tacttgtgtcaataggaaattttcattgtcagaaaaacaattt 18942602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 389
Target Start/End: Original strand, 45034964 - 45035186
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcagag------tgcactggtgtgaacgatagttaa 265  Q
    |||||||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| |||||||  |      |  ||| | |||||||  ||||||    
T  45034964 ttactttaatttgcaattggatgcaaaaacaggccaaagttcctggaaaaacccgtgca-tagtgcactggttttgttaactagcgtgaacggcagttaa 45035062  T
Q  266 ctgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaag 365  Q
    ||| ||||| ||||||| ||||||||||| ||| ||| |||||| ||||||||||  |||| |||||  ||||  ||||||||||||||  |||| ||||    
T  45035063 ctggcgctggtgccagcggttgttaactgtcggcgtatcattgaacggttgttaattgccgctggggacatttacgtattttacttgtgtcaataggaag 45035162  T
Q  366 ttttcattgtcagaaaagcaattt 389  Q
    |||||||||| ||||||| |||||    
T  45035163 ttttcattgttagaaaagtaattt 45035186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 183162 - 183074
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgt 98  Q
    ||||||| ||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||    
T  183162 atatgttacatgttacttggttggatttttatgctatgttaaatgccttagaagtatatagtttttaaggaaatgttgaaatacattgt 183074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 52560397 - 52560284
Alignment:
Q  276 tgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgt 375  Q
    ||||||| | ||||||||||||| ||| |||||||||| ||||||| |||| ||| || ||||  ||||||||||||||  |||| |||| |||||||||    
T  52560397 tgccagcggctgttaactgccggcgtatcattgagcgggtgttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgt 52560298  T
Q  376 cagaaaagcaattt 389  Q
    || |||||||||||    
T  52560297 caaaaaagcaattt 52560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 44847036 - 44846958
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||| ||||||  ||| ||| ||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  44847036 cggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattt 44846958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 183070 - 182980
Alignment:
Q  85 cttaaatacattgtccacttatttgtgnnnnnnna-aatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||| |||||||||| |||| |||||||||    
T  183070 cttaaatacattgtccacttatttgtgtttttttttaatttgttttgaacagatatgactagggatgaggatgagcggcagcgggttatta 182980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 382
Target Start/End: Original strand, 48165206 - 48165326
Alignment:
Q  262 ttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatat 361  Q
    ||||||||||||| ||||||| ||||||||||| |||   | |||| | ||||||||||| |||||||| || ||||  ||||||||||| ||  ||||     
T  48165206 ttaactgccgctggtgccagcggttgttaactgtcggccaatcatttaacggttgttaactgccgttggaggcatttacgtattttacttatgtcaatag 48165305  T
Q  362 gaagttttcattgtcagaaaa 382  Q
    |||| ||||||||||| ||||    
T  48165306 gaagatttcattgtcaaaaaa 48165326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 23585478 - 23585553
Alignment:
Q  313 gttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||| ||||||||||  |||||| ||||||||||||   |||||||| ||||| ||||||||||||||||||    
T  23585478 gttgttaactgccgttggggc-attttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattt 23585553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 23600301 - 23600376
Alignment:
Q  313 gttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||| ||||||||||  |||||| ||||||||||||   |||||||| ||||| ||||||||||||||||||    
T  23600301 gttgttaactgccgttggggc-attttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattt 23600376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 18945424 - 18945378
Alignment:
Q  128 ttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||    
T  18945424 ttgaacagatatggctaaggacgaggatgagcggcagcgggttatta 18945378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 18878837 - 18878733
Alignment:
Q  286 tgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtatttt--agtattttacttgtgctaatatgaagttttcattgtcagaaaag 383  Q
    ||||||||||||| ||| |||||||||| ||||||| |||| | ||||||||||   |||||||||||| |  |||| |||||||||  | ||| |||||    
T  18878837 tgttaactgccggcgtatcattgagcgggtgttaactgccgctaggggtattttggtgtattttacttgcgtcaataggaagttttctatatcaaaaaag 18878738  T
Q  384 caatt 388  Q
    |||||    
T  18878737 caatt 18878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 18896182 - 18896237
Alignment:
Q  119 aaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    ||||| |||||| |||||||||||||||||   ||||||||||||| |||||||||    
T  18896182 aaattggttttgtacagatatggctagggatacggatgagcagcagcgggttatta 18896237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 38108852 - 38108774
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||| ||||||  ||| ||| ||||||| |||||||||||||||  |||| ||| |||| ||||||| |||||||||||    
T  38108852 cggtagttaactaccgctggaggtatttaagtattttacttgtgtcaataggaactttttattgtcaaaaaagcaattt 38108774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 48165099 - 48165140
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttc 213  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  48165099 ttactttaatttgcaattggatgcaaaaacatgccaaagttc 48165140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 287 - 497
Target Start/End: Complemental strand, 46526155 - 46525963
Alignment:
Q  287 gttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaa 386  Q
    |||||||||||  ||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||   ||||||||||||||||||||| ||| |      
T  46526155 gttaactgccgccgtaacattgagcggttgttaacggccgctggagacattttagtattttacttgtgtcgatatgaagttttcattgtcaggaaatc-- 46526058  T
Q  387 tttccaagagaaaattgctttttgggtcaccttacttcctcataggcccctaaaaattctaaaattgtcatttatataacgaccggaagttatgatatga 486  Q
                    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46526057 ----------------gctctttgggtcaccttacttcctcataggcccctaaaaattctaaaattgtcatttatataacgaccggaagttatgatatga 46525974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 389
Target Start/End: Complemental strand, 6272679 - 6272450
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcagagtgca-------------ctggtgtgaacga 258  Q
    |||| |||||||||||||| ||||||||| |||||||||||| | | |||||||||||||||||| ||||||||             |||||||||| ||    
T  6272679 ttacattaatttccaattgaatgcaaaaacaggccaaagttcctagaaaaaccagtgcactagtggagagtgcattggttctgttaactggtgtgaatga 6272580  T
Q  259 tagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaa 358  Q
     ||||||||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||||||   |||| |||||||||||||| |||||  ||    
T  6272579 cagttaactgccgctggtgccagcgggtgttaactgcaggcgtaacattgagcggttgttaacggccg-caggggcattttagtattttatttgtgtcaa 6272481  T
Q  359 tatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||||||||| |||||||||||||    
T  6272480 tatgaagttttcattgttagaaaagcaattt 6272450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 46528811 - 46528621
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaataca------ 94  Q
    ||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  46528811 tcattttttatatgttacatgttacttggttggatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtat 46528712  T
Q  95 -----------ttgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
               |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  46528711 tcttaaatacattgtccacttatttgtgtttttttaaatttgttttgaacagatatggctagggacgaggatgagcggcagcgggttatta 46528621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 46526241 - 46526144
Alignment:
Q  175 ctttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcagagtgcactggtgtgaacgatagttaactgccgc 272  Q
    |||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46526241 ctttaatttccaattggatgcaaaaacaggccaaagttcctagaaaaaccagtgcactagtgcagagtgcactggtgtgaacggtagttaactgccgc 46526144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 172 - 389
Target Start/End: Original strand, 42014432 - 42014654
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcag-agtgc-----actggtgtgaacgatagttaa 265  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| |||||||||||| |||||||  ||| |     |||||||||||||| ||||||    
T  42014432 ttactttaatttgcaattggatgcaaaaacagaccaaagttcctggaaaaaccagtgca-tagtgcactagttctgttaactggtgtgaacgacagttaa 42014530  T
Q  266 ctgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaag 365  Q
    ||||| ||| ||||| | |||||||| || ||| ||| |||||| | ||||||||| |||  |||||| ||||  ||||||||||||||  ||||  ||     
T  42014531 ctgccactggtgccaacggttgttaaatgtcggcgtatcattgaacagttgttaactgccactgggggcatttacgtattttacttgtgtcaatagaaat 42014630  T
Q  366 ttttcattgtcagaaaagcaattt 389  Q
    ||||||||||||||||||||||||    
T  42014631 ttttcattgtcagaaaagcaattt 42014654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 247 - 389
Target Start/End: Complemental strand, 45075352 - 45075210
Alignment:
Q  247 tggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattt 346  Q
    |||||||||||  ||||||| | ||||| | ||||| |||||| |||| ||| ||| ||| |||||||||||||| |||| |||||| ||||||||||||    
T  45075352 tggtgtgaacggcagttaacagtcgctggtaccagcggttgttcactgacggcgtatcatagagcggttgttaactgccgctgggggcattttagtattt 45075253  T
Q  347 tacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||    
T  45075252 tacttgtgtcaataggaagttttcattgtcagaaaaacaattt 45075210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34195412 - 34195494
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaat 83  Q
    ||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34195412 tcattttttatatgttacatgttacttggttggatttttatgctatgttaaatgctttaaaagtatatagtttttaaggaaat 34195494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 387
Target Start/End: Complemental strand, 41957808 - 41957697
Alignment:
Q  276 tgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgt 375  Q
    ||||||| | ||||||||| ||| ||| |||||||||||||||||| ||||||||||| ||||  ||||||||| ||||  |||| |||| |||||||||    
T  41957808 tgccagcgggtgttaactgtcggcgtatcattgagcggttgttaactgccgttgggggcatttacgtattttacgtgtgtcaataggaaggtttcattgt 41957709  T
Q  376 cagaaaagcaat 387  Q
    || |||||||||    
T  41957708 caaaaaagcaat 41957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 1804414 - 1804269
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttatttg 109  Q
    ||||||| ||| ||||||| ||  |||||||||||||| | || | |||||||||||||||||||| ||||||||| |||||||||| ||||| |||||     
T  1804414 atatgttacatgttacttgcttgaatttttatgctatggtcaaagtcttaaaagtatatagttttt-aggaaatgcctaaatacattatccacgtattta 1804316  T
Q  110 tgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatg 156  Q
    ||        ||||||||||| |||||||||||| |||| |||||||    
T  1804315 tgttatttttaatttgttttgtacagatatggctggggaggaggatg 1804269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 41958438 - 41958512
Alignment:
Q  33 gatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttattt 108  Q
    ||||||||||||||| | ||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||    
T  41958438 gatttttatgctatggtcaatgccttaaaagtatatagtttct-aggaaatgcctaaatacattgtccacgtattt 41958512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 34198770 - 34198860
Alignment:
Q  85 cttaaatacattgtccacttatttgtgnnnnnnn-aaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||||||||||||||||||        |||||||| ||||||||||| | |||||||||||||||||| |||| |||||||||    
T  34198770 cttaaatacattgtccacttatttgtgttttttttaaatttgtgttgaacagataagactagggacgaggatgagcggcagcgggttatta 34198860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 46522082 - 46522031
Alignment:
Q  431 ggcccctaaaaattctaaaattgtcatttatataacgaccggaagttatgat 482  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  46522082 ggcccctaaaaattctagaattgtcatttatataatgactggaagttatgat 46522031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 13952736 - 13952655
Alignment:
Q  79 gaaatgcttaaatacattgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagca 160  Q
    ||||||| |||||||||||||||||||| ||||        ||||||||||| | ||||||||||||||| |||||||||||    
T  13952736 gaaatgcctaaatacattgtccacttatgtgtgttttttttaatttgttttgtaaagatatggctagggaggaggatgagca 13952655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 6322570 - 6322633
Alignment:
Q  306 ttgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagtttt 369  Q
    |||||||||||||||| |||| || ||| |||||| ||||||||||||| ||||| ||||||||    
T  6322570 ttgagcggttgttaactgccgctgagggcattttaatattttacttgtgttaataggaagtttt 6322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 10555072 - 10555150
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||| ||||||||||  ||||  ||||||||||||||  ||| |||| || ||| |||||||||||||||||    
T  10555072 cggttgttaactgccgttggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattt 10555150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 387
Target Start/End: Complemental strand, 10552801 - 10552700
Alignment:
Q  286 tgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagca 385  Q
    ||||||||||||||||| ||||||||||||||||||  ||| ||| |   ||||||||  |||||||||  |||| ||||| |||  ||||| |||||||    
T  10552801 tgttaactgccggtgtatcattgagcggttgttaactaccgctggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagca 10552702  T
Q  386 at 387  Q
    ||    
T  10552701 at 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 20708285 - 20708209
Alignment:
Q  313 gttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||  ||| |||||| ||||||||||||||||||||  | | |||||||| |  |||||||||||||||||    
T  20708285 gttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattt 20708209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 20876329 - 20876253
Alignment:
Q  313 gttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||  ||| |||||| ||||||||||||||||||||  | | |||||||| |  |||||||||||||||||    
T  20876329 gttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattt 20876253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 39881391 - 39881343
Alignment:
Q  341 gtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  39881391 gtattttacatgtgttaataggaagttttcattgtcagaaaaacaattt 39881343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 11409130 - 11409081
Alignment:
Q  58 taaaagtatatagtttttaaggaaatgcttaaatacattgtccacttattt 108  Q
    ||||||||||||||||| | |||||||| ||||||||||||||| ||||||    
T  11409130 taaaagtatatagttttga-ggaaatgcctaaatacattgtccatttattt 11409081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 45415361 - 45415411
Alignment:
Q  175 ctttaatttccaattggatgcaaaaataggccaaagttcttgggaaaacca 225  Q
    ||||||||| |||||||||||||||| ||| |||| ||||||| |||||||    
T  45415361 ctttaatttgcaattggatgcaaaaacaggtcaaaattcttggaaaaacca 45415411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 47317784 - 47317862
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||| ||||||  ||| |||||| |||| |||||||||||||||  | | | ||||||||| |||||||||||||||||    
T  47317784 cggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattt 47317862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 3615332 - 3615397
Alignment:
Q  324 ccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||| ||||  |||||||| |||||  |||| ||||| |||||||||| |||||||||||    
T  3615332 ccgttgggggcatttacgtattttatttgtgtcaataggaagtattcattgtcaaaaaagcaattt 3615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 31593345 - 31593389
Alignment:
Q  119 aaatttgttttgaacagatatggctagggacgaggatgagcagca 163  Q
    |||||||||||| |||||||||||||||||   ||||||||||||    
T  31593345 aaatttgttttgtacagatatggctagggatacggatgagcagca 31593389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 42013648 - 42013600
Alignment:
Q  341 gtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||||||  |||| |||| ||||||||||| |||||||||||    
T  42013648 gtattttacttgtgtcaataggaagatttcattgtcaaaaaagcaattt 42013600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 9041749 - 9041576
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtcc 100  Q
    ||||||| |||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9041749 tcattttttatatgttacatgttacttggttggatttttatgctatgttaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattctcc 9041650  T
Q  101 acttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    || |  |||||       |||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||    
T  9041649 acgtcattgtgtttttttaaatttgttttgaacagatatggctagggacgaggaggagcggcagcaggttatta 9041576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 23063099 - 23063268
Alignment:
Q  22 ttacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatg-----------------cttaaatacattgtccactt 104  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||||                 ||||||||||||||||||||    
T  23063099 ttacttggttggatttttatgctatgttaaatgccttaaaagtatatattatttaaggaaatgttgaaatacattgtattcttaaatacattgtccactt 23063198  T
Q  105 atttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||       | |||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  23063199 atttgtgcttttttatatttgttttgaatagatatggctagggacgaggatgagcggcagcgggttatta 23063268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 19871189 - 19871334
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttatttg 109  Q
    ||||||| ||| ||||||| || ||||||||||||||| | ||||||||||||||||||||||||| |||||| || |||||||||||| ||| |||||     
T  19871189 atatgttacatgttacttgcttggatttttatgctatggttaatgccttaaaagtatatagttttt-aggaaaggcctaaatacattgttcacgtattta 19871287  T
Q  110 tgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatg 156  Q
    ||        ||||||||||| |||||||||| | |||| |||||||    
T  19871288 tgttatttttaatttgttttgtacagatatggttggggaggaggatg 19871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 34394182 - 34394260
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||| | || |||||  |||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  34394182 cggttgttaactgtcgctggggacattttattattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattt 34394260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 10825367 - 10825308
Alignment:
Q  330 ggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  10825367 ggggcattttagtattttacttgtgtcaatatgaagttttcattgtcataaaagcaattt 10825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 34394122 - 34394016
Alignment:
Q  249 gtgtgaacgatagttaactgccgctgc-tgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtatttt 347  Q
    |||||||||| |||||||| ||||||  || |||| | |||||||||||||  || |||||||||||||||||| |||| ||| || ||||  |||||||    
T  34394122 gtgtgaacgacagttaactaccgctgagtgtcagcggctgttaactgccggcatatcattgagcggttgttaactgccgctggaggcatttacgtatttt 34394023  T
Q  348 acttgtg 354  Q
    |||||||    
T  34394022 acttgtg 34394016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 10825478 - 10825426
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccg 297  Q
    |||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  10825478 actggtatgaacgacagttaactgccgctgatgccagcggttgttaactgccg 10825426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 9042440 - 9042521
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaatttccaa 393  Q
    |||| ||||||  ||| ||||||||||| | ||||||||||||| ||||| |||| ||||||||||| ||||||||| |||||    
T  9042440 cggtagttaactaccgctgggggtatttaaatattttacttgtgttaataggaaggtttcattgtca-aaaagcaatctccaa 9042521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 7263287 - 7263336
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactg 294  Q
    |||||||||||||  ||||||||||||||| ||||||| |||||||||||    
T  7263287 actggtgtgaacggcagttaactgccgctggtgccagcggttgttaactg 7263336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 7263380 - 7263424
Alignment:
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||  || | ||||||||||||||||||||||||||||    
T  7263380 tttacttgtgtcaaaaggaagttttcattgtcagaaaagcaattt 7263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 4172219 - 4172383
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatg-------cttaaatac 93  Q
    |||||||  |||||||  || |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||       |||||||||    
T  4172219 tcatttttgatatgttatatgttacttggttggatttttatgctattttaaatgccttaaaagtatatagtttttaaggaaatgatgtattcttaaatac 4172318  T
Q  94 attgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgag 158  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  4172319 attgtccacttatttgtgtttttttaaatttgttttgaacagatatggctagggacgaggatgag 4172383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 40614094 - 40614003
Alignment:
Q  3 attttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacat 95  Q
    ||||| |||||||| ||| ||||||| || ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  40614094 attttttatatgttacatgttacttgcttggatttttatgctatgttcaatgccttaaaagtatatagttttt-aggaaatgcttaaatacat 40614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 26394110 - 26394252
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtat 344  Q
    ||||||||||||   ||||||||||||||| ||||||| |||||||||||| || ||| | | |||||||||||||  |||| |  ||| | || ||||     
T  26394110 actggtgtgaacatcagttaactgccgctggtgccagcggttgttaactgctggcgtatcttggagcggttgttaattgccgctatgggcaattgagtaa 26394209  T
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaat 387  Q
    ||||||||||  ||||  |||||||||||||||||||||||||    
T  26394210 tttacttgtgtcaatagaaagttttcattgtcagaaaagcaat 26394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 31500860 - 31500782
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||| |||| ||  || ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  31500860 cggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattt 31500782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 40613819 - 40613732
Alignment:
Q  87 taaatacattgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||||||||||||||||       |||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||    
T  40613819 taaatacattgtccacttatttgtgtttatttaaatttgttttgcacagatgtggctagggatgaggatgagcggcagtgggttatta 40613732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 2119525 - 2119447
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||| |||| |||| | |||| | |||||||||||||  |||||||||||||||||||||||||| ||||||    
T  2119525 cggttgttaactgccgctgggagcatttcaatattttacttgtgtcaatatgaagttttcattgtcagaaaatcaattt 2119447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 4425943 - 4425883
Alignment:
Q  326 gttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaa 386  Q
    |||||||| |||| ||||||||||||||| || | ||||||||||| ||||||||||||||    
T  4425943 gttgggggcatttaagtattttacttgtgttattgtgaagttttcaatgtcagaaaagcaa 4425883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 13331822 - 13331898
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaac 321  Q
    |||||||||||||  ||||||||||||||| ||||||| |||||||||| |||| |||  ||||| ||| |||||||    
T  13331822 actggtgtgaacggcagttaactgccgctggtgccagcggttgttaacttccggcgtattattgaacggctgttaac 13331898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 26394032 - 26394090
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgca 230  Q
    |||||||||||| |||||||||||||||| ||| |||| ||| ||| ||||||||||||    
T  26394032 ttactttaatttgcaattggatgcaaaaagaggacaaatttcctggaaaaaccagtgca 26394090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 28654700 - 28654778
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||  ||||  ||| ||||||||| |||||| ||||||    
T  28654700 cggttgttaactgccgctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgttagaaaaacaattt 28654778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 26172157 - 26172206
Alignment:
Q  58 taaaagtatatagtttttaaggaaatgcttaaatacattgtccacttattt 108  Q
    |||||||||||| |||||| |||||||| |||||||||||||||| |||||    
T  26172157 taaaagtatataattttta-ggaaatgcctaaatacattgtccacgtattt 26172206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 19508897 - 19508949
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccg 297  Q
    |||||||||||||  ||||||||||||||  | ||||| ||||||||||||||    
T  19508897 actggtgtgaacggcagttaactgccgcttgtaccagcggttgttaactgccg 19508949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 37313308 - 37313352
Alignment:
Q  254 aacgatagttaactgccgctgctgccagcagttgttaactgccgg 298  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||    
T  37313308 aacgacagttaactgccgctggagccagcggttgttaactgccgg 37313352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 18239588 - 18239454
Alignment:
Q  254 aacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgt 353  Q
    ||||| ||||||||||||||| | ||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18239588 aacgacagttaactgccgctggtaccagcggttgttaactgccggcgtatcattgagcggttgttaactgccgttgggggtattttagtattttacttgt 18239489  T
Q  354 gctaatatgaagttttcattgtcagaaaagcaatt 388  Q
    |  |||| |||||||||  ||||| ||||||||||    
T  18239488 gtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 42057821 - 42057630
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaataca------ 94  Q
    |||||||  ||||||| ||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||          
T  42057821 tcatttttgatatgttacatgttatttggttggatttttatgctatgttaaatgccttaaaagtatatagtgtttaaggaaatgttgaaatacattgtat 42057722  T
Q  95 -----------ttgtccacttatttgtg-nnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
               |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42057721 tcttaaatacattgtccacttatttgtgtttttttttaatttgttttgaacagatatggctagggacgaggatgagcagcagcgggttatta 42057630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 27105774 - 27105629
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccg-ttgggggtattttagta 343  Q
    |||||| ||||||  ||||||||||||||| ||||||| | ||||||||||||| |    ||  | ||||||||||  |||| ||||||  |||||||||    
T  27105774 actggtatgaacggcagttaactgccgctggtgccagcgggtgttaactgccggcgctttatccaacggttgttaattgccgcttggggacattttagta 27105675  T
Q  344 ttttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||    
T  27105674 ttttacttgtgtcaatatgaagttttcattgtcagaaaaacaattt 27105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 42463280 - 42463203
Alignment:
Q  312 ggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||| | |||||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||    
T  42463280 ggttgttaactgtcgttgggggtattttagtattttaattatgtcaatatgaagttttcattgtcagaaaagcaattt 42463203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 389
Target Start/End: Original strand, 31387893 - 31388030
Alignment:
Q  252 tgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttactt 351  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| |    ||  | | ||||||||| |||| ||| || |||||||||||||||||    
T  31387893 tgaacgatagttaactgccgctggtgccagcggttgttaactgtcggcgctttatccaacagttgttaactgccgctggaggcattttagtattttactt 31387992  T
Q  352 gtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
     ||  |||||||| |||||||| ||| |||||||||||    
T  31387993 atgtcaatatgaaattttcattatcataaaagcaattt 31388030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 4911700 - 4911556
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtat 344  Q
    |||||| ||||||| |||||||||||||||   ||||| | ||||||||||||| ||   |   | ||||||||||| | || ||  || |||||| |||    
T  4911700 actggtatgaacgacagttaactgccgctggatccagcggatgttaactgccggcgttttacccaacggttgttaaccgtcgctgatggcattttaatat 4911601  T
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||  ||||||||||||||||||||| |||| ||||||    
T  4911600 tttacttgtgtcaatatgaagttttcattgtcaaaaaaacaattt 4911556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 36354692 - 36354640
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccg 297  Q
    |||||||||||||| |||||||||||||||  | |||| ||||||||||||||    
T  36354692 actggtgtgaacgacagttaactgccgctggagtcagcggttgttaactgccg 36354640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 18240473 - 18240528
Alignment:
Q  119 aaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||| |||||||||||| ||||   ||||||||||||| |||||||||    
T  18240473 aaatttgttttgtacagatatggcttgggatacggatgagcagcagcgggttatta 18240528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 27108464 - 27108409
Alignment:
Q  119 aaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||| ||| |||||||||||||   ||||||||||||| |||||||||    
T  27108464 aaatttgttttgtacatatatggctagggatacggatgagcagcagcgggttatta 27108409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 12789712 - 12789647
Alignment:
Q  324 ccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||| | ||||||||||||||||||||  | | |||||||| |  |||||||||||||||||    
T  12789712 ccgttgggagcattttagtattttacttgtgtcattgtgaagtttcctatgtcagaaaagcaattt 12789647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 45475460 - 45475545
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgg 330  Q
    |||||||||| ||  |||||| ||||||||   ||||||||||||||||||||| |||  ||||| ||| |||||||  |||||||    
T  45475460 actggtgtgagcggcagttaattgccgctgggtccagcagttgttaactgccggcgtactattgaacggctgttaactaccgttgg 45475545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 22093431 - 22093379
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccg 297  Q
    |||||||||||||  ||||||||||||||| | ||||| |||||||| |||||    
T  22093431 actggtgtgaacggcagttaactgccgctggtaccagcggttgttaattgccg 22093379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 5620689 - 5620833
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtat 344  Q
    |||||||||||| | ||| ||||||||||| ||||||| ||||||||||||||  ||| |||||| ||||||||||| |||| |||||| ||||  |||     
T  5620689 actggtgtgaacaacagtcaactgccgctggtgccagcggttgttaactgccgacgtatcattgaacggttgttaactgccgctgggggcatttacgtag 5620788  T
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||  |||| ||||||||||||||||||||| ||||||    
T  5620789 tttacttgtgtcaataggaagttttcattgtcagaaaaacaattt 5620833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 31860641 - 31860786
Alignment:
Q  245 actggtgtgaacgatagttaactgccgct-gctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagta 343  Q
    |||||||||||||  ||||||||||| || | | ||| | ||||||||||||||| |||  ||||||||||||||||| |||| |||||| | ||  ||     
T  31860641 actggtgtgaacggcagttaactgcctctaggttccaacggttgttaactgccggagtattattgagcggttgttaactgccgctgggggcaattatgtc 31860740  T
Q  344 ttttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
     ||||||||||  | | ||||||||||  |||||||||||||||||    
T  31860741 atttacttgtgtcattgtgaagttttctatgtcagaaaagcaattt 31860786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 5614578 - 5614634
Alignment:
Q  51 aatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttattt 108  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||    
T  5614578 aatgccttaaaagtatatagttttt-aggaaatacctaaatacattgtccacatattt 5614634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 1259416 - 1259362
Alignment:
Q  120 aatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||  |||||||||    
T  1259416 aatttgttttgtacagatatggctagggatgaggatgagcggcaacgggttatta 1259362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 2946414 - 2946472
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgca 230  Q
    |||||||||||| ||||||||||||||| |||| |||| ||| ||| ||||||||||||    
T  2946414 ttactttaatttgcaattggatgcaaaattaggacaaatttcctggaaaaaccagtgca 2946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 19273052 - 19272993
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatata 69  Q
    ||||||| ||| ||||||| || ||||||||||||||| | ||||||| |||||||||||    
T  19273052 atatgttacatgttacttgtttggatttttatgctatgttcaatgcctaaaaagtatata 19272993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31302977 - 31303150
Alignment:
Q  1 tcattttatatatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatg---------------- 84  Q
    |||||||  ||||||| ||| ||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||                    
T  31302977 tcatttttgatatgttacatgttatttggttggatttttatgctatgttaaatgccttaaaagtatatagtttttaagaaaatgttgaaatacattgtat 31303076  T
Q  85 -cttaaatacattgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatga 157  Q
     |||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||    
T  31303077 tcttaaatacattgtccacttatttgtgtttttttaaatttgttttgaacaggtatggctagggacgaggatga 31303150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 54602433 - 54602329
Alignment:
Q  285 ttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagc 384  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |  ||||||||||||||||  || |||||| |||||||||| |||| ||||||    
T  54602433 ttgttaactgccggtgtaacattgagcggttgttaacggccgctgaagacattttagtattttactaatgttaatataaagttttcatggtcaaaaaagc 54602334  T
Q  385 aattt 389  Q
    |||||    
T  54602333 aattt 54602329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 12024647 - 12024503
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtat 344  Q
    ||||||||||| |  ||||||||||||||| ||||||| | |||||| |||||| ||| ||| ||| || ||||||| | || |||||| | ||  |||     
T  12024647 actggtgtgaatggcagttaactgccgctggtgccagcgggtgttaattgccggcgtatcatggagtgggtgttaactgtcgctgggggcaattgggtaa 12024548  T
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||  |||| ||||||||||||||||||||| ||||||    
T  12024547 tttacttgtgtcaataggaagttttcattgtcagaaaatcaattt 12024503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 39390246 - 39390102
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttatttg 109  Q
    ||||||| ||| ||||||| || |||||| ||| || | | ||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||     
T  39390246 atatgttacatgttacttgcttggatttt-atgttacggtcaatgccttaaaagtatatagttttt-aggaaatgcctaaatacattctccacgtattta 39390149  T
Q  110 tgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatg 156  Q
    ||        ||||||||||| |||||||||||| |||| |||||||    
T  39390148 tgttatttttaatttgttttgtacagatatggctggggaggaggatg 39390102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 2333824 - 2333902
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||||  |||||||||| |||| |||||||||||||||  | | |||||||||   |||||||||||||||||    
T  2333824 cggttgttaacaaccgttgggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattt 2333902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 15502808 - 15502887
Alignment:
Q  309 agcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaatt 388  Q
    |||||| ||||||  ||| | ||||||||||||||||||||||||| || || ||||| || | ||||| ||||||||||    
T  15502808 agcggtagttaactaccgcttggggtattttagtattttacttgtgttactaggaagtattgaatgtcaaaaaagcaatt 15502887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 40729931 - 40729985
Alignment:
Q  335 attttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||| |||||||||||||||  | | ||||||||||| |||||||||||||||||    
T  40729931 atttaagtattttacttgtgtcattgtgaagttttcaatgtcagaaaagcaattt 40729985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 40494037 - 40494157
Alignment:
Q  269 ccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttt 368  Q
    |||||||||||||| |||||||||||| || ||  |||||| | ||||||||| | || ||||| ||||| |||||||||||||||  |||| |||||||    
T  40494037 ccgctgctgccagcggttgttaactgctggcgtctcattgaacagttgttaactgtcgatggggatatttaagtattttacttgtgtcaataggaagttt 40494136  T
Q  369 tcattgtcagaaaagcaattt 389  Q
    |||||||||||||| ||||||    
T  40494137 tcattgtcagaaaatcaattt 40494157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 8318953 - 8318856
Alignment:
Q  10 atatgttgcatattacttggtttgatttttatgctatgctaaatgccttaaaagtatatagtttttaaggaaatgcttaaatacattgtccacttattt 108  Q
    ||||||| ||| ||||||| || ||||||||||||||| | ||||||||||||||||||||||||| ||||||| | |||||||||||| ||| |||||    
T  8318953 atatgttacatgttacttgcttggatttttatgctatggtcaatgccttaaaagtatatagttttt-aggaaatccctaaatacattgttcacgtattt 8318856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 172 - 389
Target Start/End: Original strand, 41270158 - 41270380
Alignment:
Q  172 ttactttaatttccaattggatgcaaaaataggccaaagttcttgggaaaaccagtgcactagtgcagag------tgcactggtgtgaacgatagttaa 265  Q
    |||||||||||| |||||| ||||||||| |||||||||||| ||| ||||||||||||  ||||||  |      |  ||| |||||||||  | ||||    
T  41270158 ttactttaattttcaattgtatgcaaaaacaggccaaagttcctggaaaaaccagtgcag-agtgcactggttttgttaactagtgtgaacggcaattaa 41270256  T
Q  266 ctgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaag 365  Q
    ||||||||| || |||  ||||||||||| ||| ||| |||  ||||||||||||| | || | | || ||||  ||||||||||||||  ||||||||     
T  41270257 ctgccgctggtgtcagtggttgttaactgtcggcgtatcatgaagcggttgttaactgtcgctagaggcatttacgtattttacttgtgtcaatatgaaa 41270356  T
Q  366 ttttcattgtcagaaaagcaattt 389  Q
    |||||| ||||| |||||||||||    
T  41270357 ttttcactgtcaaaaaagcaattt 41270380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 389
Target Start/End: Original strand, 20495488 - 20495610
Alignment:
Q  266 ctgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaag 365  Q
    ||||||||| ||||||| ||||||||||| ||| ||| ||||||||  |||||||| ||||  ||| | || |||||||||||||||||  |||| ||||    
T  20495488 ctgccgctggtgccagcggttgttaactgtcggcgtatcattgagcaattgttaactgccg-cgggagcatgttagtattttacttgtgtcaatacgaag 20495586  T
Q  366 ttttcattgtcagaaaagcaattt 389  Q
    |||||  ||||| |||||||||||    
T  20495587 ttttctatgtcaaaaaagcaattt 20495610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 41267501 - 41267591
Alignment:
Q  85 cttaaatacattgtccacttatttgtgnnnnnnnaaa-tttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    |||||||||||||||||||||||||||       ||| ||||||||||| ||||||| |||||||||||||||||| |||  |||||||||    
T  41267501 cttaaatacattgtccacttatttgtgtttttttaaaatttgttttgaatagatatgcctagggacgaggatgagcggcatcgggttatta 41267591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 8316313 - 8316235
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||  ||| |||| || ||| |||||||||||||||||    
T  8316313 cggttgttaacggccgttgaggacatttaagtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattt 8316235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 45120658 - 45120802
Alignment:
Q  245 actggtgtgaacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtat 344  Q
    |||||||||||||  ||||||||||||||| ||||||| | |||||||||  || |||  ||||| ||  ||||||| |||| |||||  | || ||||     
T  45120658 actggtgtgaacggcagttaactgccgctggtgccagcggctgttaactgttggcgtattattgaacgactgttaactgccgctggggacaattaagtaa 45120757  T
Q  345 tttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||  | | |||| |||||  |||||||||||||||||    
T  45120758 tttacttgtgtcattgtgaacttttctatgtcagaaaagcaattt 45120802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 41267462 - 41267497
Alignment:
Q  63 gtatatagtttttaaggaaatgcttaaatacattgt 98  Q
    ||||||||||||||||||||||||||||||||||||    
T  41267462 gtatatagtttttaaggaaatgcttaaatacattgt 41267497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 20477257 - 20477180
Alignment:
Q  311 cggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaatt 388  Q
    ||||||||||| |||| |||||| ||||  ||||||||||||||  ||| |||| || ||| ||||||||||| ||||    
T  20477257 cggttgttaactgccgctgggggcatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagtaatt 20477180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 6253384 - 6253304
Alignment:
Q  309 agcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||| ||||||  |||||||||| |||| | |||||||||||||  | | ||||||||||  ||| |||||||||||||    
T  6253384 agcggtagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattt 6253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 42095493 - 42095413
Alignment:
Q  309 agcggttgttaacggccgttgggggtattttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    |||||||||||||  |||   |||| ||||||||||||||||||||  ||||  || |||||||||||| |||| ||||||    
T  42095493 agcggttgttaactaccggaaggggcattttagtattttacttgtgtcaatagaaaattttcattgtcataaaatcaattt 42095413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 369
Target Start/End: Original strand, 28597 - 28707
Alignment:
Q  254 aacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgt 353  Q
    ||||| ||||||||||||||| ||||||| |     ||||||||| ||| |||||||||| ||||||| |||||| |||| |||||||||||||||||||    
T  28597 aacgacagttaactgccgctggtgccagcgg-----aactgccggcgtatcattgagcggctgttaactgccgttaggggcattttagtattttacttgt 28691  T
Q  354 gctaatatgaagtttt 369  Q
    |  |||||||| ||||    
T  28692 gtcaatatgaaatttt 28707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 369
Target Start/End: Complemental strand, 44247 - 44137
Alignment:
Q  254 aacgatagttaactgccgctgctgccagcagttgttaactgccggtgtaacattgagcggttgttaacggccgttgggggtattttagtattttacttgt 353  Q
    ||||| ||||||||||||||| ||||||| |     ||||||||| ||| |||||||||| ||||||| |||||| |||| |||||||||||||||||||    
T  44247 aacgacagttaactgccgctggtgccagcgg-----aactgccggcgtatcattgagcggctgttaactgccgttaggggcattttagtattttacttgt 44153  T
Q  354 gctaatatgaagtttt 369  Q
    |  |||||||| ||||    
T  44152 gtcaatatgaaatttt 44137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 1027 - 1122
Alignment:
Q  79 gaaatgcttaaatacattgtccacttatttgtgnnnnnnnaaatttgttttgaacagatatggctagggacgaggatgagcagcagtgggttatta 174  Q
    ||||||| ||||||||||||| |||||||| ||       |||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||    
T  1027 gaaatgcctaaatacattgtctacttatttatgtttttttaaatttgttttgtacatatatggctagggaggaggatgagcagcagcgggttatta 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 2660 - 2606
Alignment:
Q  335 attttagtattttacttgtgctaatatgaagttttcattgtcagaaaagcaattt 389  Q
    ||||||||||||||||||||  |||| |||||| |||||||||||||||||||||    
T  2660 attttagtattttacttgtgtcaataggaagttgtcattgtcagaaaagcaattt 2606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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