View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14023_low_14 (Length: 451)

Name: NF14023_low_14
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14023_low_14
NF14023_low_14
[»] chr4 (4 HSPs)
chr4 (142-376)||(32269588-32269825)
chr4 (100-144)||(55960697-55960741)
chr4 (388-417)||(32269543-32269572)
chr4 (102-142)||(6256481-6256521)
[»] chr8 (5 HSPs)
chr8 (100-141)||(18549979-18550020)
chr8 (104-141)||(43590705-43590742)
chr8 (100-141)||(4148685-4148726)
chr8 (100-141)||(23708976-23709017)
chr8 (100-133)||(42688435-42688468)
[»] chr2 (5 HSPs)
chr2 (100-141)||(12256901-12256942)
chr2 (100-141)||(19637229-19637270)
chr2 (100-141)||(19835822-19835863)
chr2 (100-141)||(34141442-34141483)
chr2 (100-144)||(18749393-18749437)
[»] chr1 (4 HSPs)
chr1 (100-144)||(40118745-40118789)
chr1 (100-142)||(31244763-31244805)
chr1 (100-141)||(8577532-8577573)
chr1 (100-140)||(5574289-5574329)
[»] scaffold0514 (1 HSPs)
scaffold0514 (100-143)||(1875-1918)
[»] chr5 (3 HSPs)
chr5 (100-138)||(12613034-12613072)
chr5 (100-141)||(34693246-34693287)
chr5 (100-140)||(30103481-30103521)
[»] chr3 (5 HSPs)
chr3 (100-142)||(30664502-30664544)
chr3 (100-141)||(29555868-29555909)
chr3 (100-141)||(45517687-45517728)
chr3 (100-141)||(48205045-48205086)
chr3 (103-143)||(55264815-55264855)
[»] chr6 (1 HSPs)
chr6 (100-141)||(34792022-34792063)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 142 - 376
Target Start/End: Complemental strand, 32269825 - 32269588
Alignment:
Q  142 attgtttaatgattgaaataaatcatttggtagttaccatccgtgaannnnnnnaacgaaagttgcaattggatatattttatataatcgaaagttacaa 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||    
T  32269825 attgtttaatgattgaaataaaccatttggtagttaccatccgtgaatttttttaacgaaagttgcaattcgatatattttatataatcgaaagttacaa 32269726  T
Q  242 tctgataaattgaatgaattttgaatacaaataaatagtctatataacaattatataatatgaaact---ccaacttttgtgttgggagccccggtttga 338  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  32269725 tctgatcaattgaatgaattttgaatacaactaaatagtctatataataattatataatatgaaactcaaccaacttttgtgttgggagccccggtttga 32269626  T
Q  339 ataaaatgatacatgtcacaaaacttcataatgtgggt 376  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32269625 ataaaatgatacatgtcacaaaacttcataatgtgggt 32269588  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 55960741 - 55960697
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 144  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||    
T  55960741 tacaaaagttataccaaaatggttatacaaatatcatttctcatt 55960697  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Complemental strand, 32269572 - 32269543
Alignment:
Q  388 caaataatttagtggaaaaaattcacagga 417  Q
    ||||||||||||||||||||||||||||||    
T  32269572 caaataatttagtggaaaaaattcacagga 32269543  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 6256481 - 6256521
Alignment:
Q  102 caaaagttatacaaaaatgattatacaaatatgatttctca 142  Q
    |||||||| ||||||||||||| ||||||||| ||||||||    
T  6256481 caaaagttgtacaaaaatgattgtacaaatattatttctca 6256521  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 18550020 - 18549979
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  18550020 tacaaaagttatacaaaaatgattgtacaaatatcatttctc 18549979  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 43590742 - 43590705
Alignment:
Q  104 aaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43590742 aaagttatacaaaaatgattatacaaatatcatttctc 43590705  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 4148685 - 4148726
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||| |||||||||| |||||||||||| |||||||    
T  4148685 tacaaaagttgtacaaaaatggttatacaaatatcatttctc 4148726  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 23709017 - 23708976
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  23709017 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 23708976  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 42688468 - 42688435
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatat 133  Q
    |||||||||||||||||||||||| |||||||||    
T  42688468 tacaaaagttatacaaaaatgattgtacaaatat 42688435  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 12256942 - 12256901
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  12256942 tacaaaagttatacaaaaatgattgtacaaatatcatttctc 12256901  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 19637270 - 19637229
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  19637270 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 19637229  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 19835863 - 19835822
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  19835863 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 19835822  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 34141483 - 34141442
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  34141483 tacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34141442  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 18749393 - 18749437
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 144  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  18749393 tacaaaaattatacaaaaatggttgtacaaatatcatttctcatt 18749437  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 40118745 - 40118789
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 144  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  40118745 tacaaaaattatacaaaaatgattgtacaaatatcatttctcatt 40118789  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 31244763 - 31244805
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctca 142  Q
    ||||||| || ||||||||||||||||||||||| ||||||||    
T  31244763 tacaaaaattgtacaaaaatgattatacaaatatcatttctca 31244805  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 8577532 - 8577573
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  8577532 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 8577573  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 5574289 - 5574329
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttct 140  Q
    |||||||||| ||||||||||||| ||||||||| ||||||    
T  5574289 tacaaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

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Target: scaffold0514 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 1875 - 1918
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctcat 143  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    
T  1875 tacaaaagttatacaaaaatggttgtacaaatatcatttctcat 1918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 12613034 - 12613072
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgattt 138  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  12613034 tacaaaaattatacaaaaatgattatacaaatatcattt 12613072  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 34693246 - 34693287
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  34693246 tacaaaaattatacaaaaatgattgtacaaatatcatttctc 34693287  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 30103481 - 30103521
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttct 140  Q
    ||||||| |||||||||||||||| ||||||||| ||||||    
T  30103481 tacaaaaattatacaaaaatgattgtacaaatatcatttct 30103521  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 30664544 - 30664502
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctca 142  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||    
T  30664544 tacaaaagttgtacaaaaatgattgtacaaatatcatttctca 30664502  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 29555868 - 29555909
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  29555868 tacaaaagttatacaaaaatggttgtacaaatattatttctc 29555909  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 45517687 - 45517728
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  45517687 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 45517728  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 48205086 - 48205045
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  48205086 tacaaaaattatacaaaaatgattgtacaaatatcatttctc 48205045  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 55264855 - 55264815
Alignment:
Q  103 aaaagttatacaaaaatgattatacaaatatgatttctcat 143  Q
    |||||||||||||||||| || ||||||||| |||||||||    
T  55264855 aaaagttatacaaaaatggttgtacaaatatcatttctcat 55264815  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 34792063 - 34792022
Alignment:
Q  100 tacaaaagttatacaaaaatgattatacaaatatgatttctc 141  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  34792063 tacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34792022  T

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