View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_17 (Length: 407)
Name: NF14023_low_17
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 44167341 - 44166961
Alignment:
| Q |
11 |
cacagaagtcatatcatggaacctttctcatgttcattctcaccctcaacaatcaattaacactaacacaatagtatctggaaatggtgctgtgaaatcc |
110 |
Q |
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| T |
44167341 |
cacagaagtcacatcatggaacctttctcatgttcattctcaccctcaacaatcaattaacactaacacaatagtatctggaaatggtgctgtgaaatcc |
44167242 |
T |
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| Q |
111 |
attgtagttcattcagacaagcttttcactgctcaccaagataacaaaatccgcgtttggaaaatcaccaatatcaacaacgaatctcaacatcaaaagt |
210 |
Q |
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| T |
44167241 |
attgtagttcattcagacaagcttttcactgctcaccaagataacaaaatccgcgtttggaaaatcaccaatatcaacaacgaatctcaacaacaaaagt |
44167142 |
T |
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| Q |
211 |
tcacccatttagccacactcccaacattcatagaccgtttcacgaaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatg |
310 |
Q |
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| T |
44167141 |
tcacccatttagccacactcccaacattcatagaccgtttcacgaaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatg |
44167042 |
T |
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| Q |
311 |
ggtgcaccatgttgacacagtctcatctcttgccttatctaaagatggaaccttattgtattctgtttcatgggacagaac |
391 |
Q |
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| T |
44167041 |
ggtgcaccatgttgacacagtctcatctcttgccttatctaaagatggaaccttattgtattctgtttcatgggacagaac |
44166961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 391
Target Start/End: Complemental strand, 35312970 - 35312834
Alignment:
| Q |
255 |
aaaatctttatcccgaaaaaccatgttaatattcgaaggcacaaaaaatgcacatgggtgcaccatgttgacacagtctcatctcttgccttatctaaag |
354 |
Q |
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| T |
35312970 |
aaaatcttaatcccaaaaaaccatgtccaaattcgtagacacaaaaaatgcacgtgggttcatcatgtggacactgtttcttcacttgctctgtctaaag |
35312871 |
T |
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| Q |
355 |
atggaaccttattgtattctgtttcatgggacagaac |
391 |
Q |
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| T |
35312870 |
atggaaagtttttgtactctgtttcatgggacagaac |
35312834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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