View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_18 (Length: 390)
Name: NF14023_low_18
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_18 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 19781301 - 19781689
Alignment:
| Q |
1 |
aaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatctacgagaaataaaaaatagacggataa |
100 |
Q |
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| T |
19781301 |
aaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatttacgagaaataaaaaatagacggataa |
19781400 |
T |
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| Q |
101 |
tacaaactctcagtataatactaagaagttacaccactttttatnnnnnnnnttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaaca |
200 |
Q |
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| T |
19781401 |
tacaaactctcagtataatactaagaagttacaccactttttataaaaaaa-ttacttgttttggttgcttaaccaatgccccaggagcactgtttaaca |
19781499 |
T |
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| Q |
201 |
ttctcctactaagaatattaacaattgtcacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacaggtttcgag |
300 |
Q |
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| T |
19781500 |
ttctcctactaagaatattaacaattgttacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacaggtttcgag |
19781599 |
T |
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| Q |
301 |
taaggagtgcatgttttgatgatatctccggaagggagtgacaaggagtggatactccccgacacgccacctgcaaagagaaagtcacca |
390 |
Q |
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| T |
19781600 |
taaggagtgcatgttttgatgatatctccggaagggagtgacaaggagtggatactccccgacacgccacctgcaaagagaaagtcacca |
19781689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 8435080 - 8435025
Alignment:
| Q |
153 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctccta |
208 |
Q |
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| T |
8435080 |
ttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctccta |
8435025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 6830291 - 6830262
Alignment:
| Q |
153 |
ttacttgttttggttgcttaaccaatgcct |
182 |
Q |
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| T |
6830291 |
ttacttgttttggttgcttaaccaatgcct |
6830262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 7609630 - 7609685
Alignment:
| Q |
153 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctcctac |
209 |
Q |
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| T |
7609630 |
ttacttcttttggt-gcttaaccaatgccccgggagcactggttaacattctcctac |
7609685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 18107 - 18135
Alignment:
| Q |
153 |
ttacttgttttggttgcttaaccaatgcc |
181 |
Q |
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| T |
18107 |
ttacttgttttggttgcttaaccaatgcc |
18135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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