View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14023_low_2 (Length: 628)
Name: NF14023_low_2
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 188 - 605
Target Start/End: Original strand, 37958462 - 37958863
Alignment:
| Q |
188 |
gagcgagaattaaatcaacacaaaaaactatctaacctcacatcagaacacccaacctcgattaaacaagaagaataatactagaaaaagaacctcacag |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
37958462 |
gagcgagaattaaatcaacacaaaaaactatctaacctcacatcagaataccttacctcggttaaacaagaagattaatactaggaaaagaacctcacac |
37958561 |
T |
|
| Q |
288 |
tcaaccaactcttgtacaaatccaccacatgatactatcgatgtgaacacagagtaagttcataatcttata--------gaataggtgtgaccataata |
379 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37958562 |
tcaaccaacccttgtacaaatccacc------------cg-tgttaacacagagtaagttcataatcttattcatacaaggaataggtgtgaccataata |
37958648 |
T |
|
| Q |
380 |
nnnnnnnnncttttcaaaaaccattccaaaaggtgaatttaaccatagaatagtgccaacaacactatctccaacacttttaaaatgggttcaacttatt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958649 |
ttttttttttctttcaaaaaccattccaaaaggtgaatttaaccatagaatagtgccaacaacactatctccaacacttttaaaatgggttcaact---- |
37958744 |
T |
|
| Q |
480 |
attaacttattattagcaacaaaaagaagaagaagagaacttaaatctaagtctaacagttctggtggggatctaaaacccaaacacataaattttcaac |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37958745 |
-------tattattagcaacaaaaagaagaagaagagaacttaaatctaagtctaacagttctggtggggatctaaaacccaaacacataaattttcaac |
37958837 |
T |
|
| Q |
580 |
ccacatgaatgaggacttggatttgt |
605 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
37958838 |
ccacattaatgaggacttggatttgt |
37958863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University