View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_20 (Length: 364)
Name: NF14023_low_20
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 11025274 - 11025613
Alignment:
| Q |
1 |
aggataatcagtactctcagcaaaagtatctacacaagaggtatggtatgaaagaatcgcgctaaattgggcatttacttcttgagcattgcgcacagcg |
100 |
Q |
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| T |
11025274 |
aggataatcattactctcagcaaaagtatctacacaagaggtatggtatgaaagaatcccgctaaattgagcatttacttcttgagcattgcgcacagcg |
11025373 |
T |
|
| Q |
101 |
agggccgcaacggcattggttatagaatcgggcatcatttcatattgttgcttgcaacaatcaagtgatccacttacgtctgcgttgtttgcatatttag |
200 |
Q |
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| T |
11025374 |
agggccgcaacggcattggttatagaatcaggcatcatttcatattgttgcttgcaacaatcaagtgatccacttacgtctgcgttgtttgcatatttag |
11025473 |
T |
|
| Q |
201 |
gtatcagagatgtaatgatagctaacgttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11025474 |
gtatcagagatgtaatgatagctaacgttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggt |
11025573 |
T |
|
| Q |
301 |
caatgcttttggtaatattgttttgaaacatatacctgcc |
340 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
11025574 |
caatgctttcggtaatattgttttgaaacatatacctgcc |
11025613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 10891535 - 10891432
Alignment:
| Q |
227 |
gttttattgatttgtacacttgctgcttgagtctcaacctcaagggctttgtatatgttgaatttaggagtggtcaatgcttttggtaatattgttttga |
326 |
Q |
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|||||||||||| || ||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||| ||| |
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| T |
10891535 |
gttttattgattcttatacttgtttcttgagtctcaacctcaagggctgtgtatatgttgaatttaggagcgctctctgcttttggtaatattgtattgt |
10891436 |
T |
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| Q |
327 |
aaca |
330 |
Q |
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|||| |
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| T |
10891435 |
aaca |
10891432 |
T |
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