View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_21 (Length: 358)
Name: NF14023_low_21
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_21 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 185 - 358
Target Start/End: Original strand, 23705549 - 23705714
Alignment:
| Q |
185 |
ttttgcttgagttattacctatatttcaaaattcgtagtcattaaacaaccagaacaattacctgaatgagcctgaaaagaggtaaggcttaacaaacca |
284 |
Q |
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| T |
23705549 |
ttttgcttgagttattacctatatttaaaaattcgtagtcactaaacaaccagaacaattacctgattgagcctgaaaagaggtaaggcttaacaaacca |
23705648 |
T |
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| Q |
285 |
tcacctcaacaattaccgaaacacggcggcattgtaaatttgtaacagaaacggctagttcgccggagaaggca |
358 |
Q |
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| T |
23705649 |
tcacctcaacaattaccgaaacacggtggca--------ttgtaacagaaacggctagttcgccggagaaggca |
23705714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 23705430 - 23705548
Alignment:
| Q |
16 |
catacacttctcggattaggtgtgttgcggtgtccgacacaacacccacatgtaataccctgaattttgtgattttctcaaattatta---gcgtcagtg |
112 |
Q |
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| T |
23705430 |
catacacttctcggattaggtgtgttgcggtgtccgacacgacatccacatgtaataccctgaattttgtgattttttcaaattattagcggcgtcggtg |
23705529 |
T |
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| Q |
113 |
tgtcagtttcagtgtcggt |
131 |
Q |
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| T |
23705530 |
tgtcagtttcagtgtcggt |
23705548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 23653310 - 23653181
Alignment:
| Q |
171 |
agacgaatttgttgttttgcttgagttattacctatatttcaaaattcgtagtc--at-taaacaaccagaacaattacctgaatgagcctgaaaagagg |
267 |
Q |
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| T |
23653310 |
agacgagtttgatgttttacttgagttattacctatgctttaaaattcgtagtctgatataaactaccagaacaattacctgattgagcctgaaaagggg |
23653211 |
T |
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| Q |
268 |
taaggcttaacaaaccatcacctcaacaat |
297 |
Q |
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| T |
23653210 |
taaggcttaacaaaccatcaccacaacaat |
23653181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 23622223 - 23622153
Alignment:
| Q |
227 |
taaacaaccagaacaattacctgaatgagcctgaaaagaggtaaggcttaacaaaccatcacctcaacaat |
297 |
Q |
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| T |
23622223 |
taaacaaccagaacaattaccagattgagcctgaaaaggggtaaggcttaacaaaccatcaccacaacaat |
23622153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 9025458 - 9025547
Alignment:
| Q |
19 |
acacttctcggattaggtgtgttgcggtgtccgacacaacacc--cacatgtaat-accctgaattttgtgattttctcaaattattagc |
105 |
Q |
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| T |
9025458 |
acacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgtgattttctcaaattattagc |
9025547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 2424650 - 2424618
Alignment:
| Q |
75 |
ctgaattttgtgattttctcaaattattagcgt |
107 |
Q |
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| T |
2424650 |
ctgaattatgtgattttctcaaattattagcgt |
2424618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 2665884 - 2665940
Alignment:
| Q |
49 |
ccgacacaacacccacatgtaa-taccctgaattttgtgattttctcaaattattag |
104 |
Q |
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| T |
2665884 |
ccgacacaacacccacatataattacactaaattatgtgattttctaaaattattag |
2665940 |
T |
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