View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_23 (Length: 337)
Name: NF14023_low_23
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 277
Target Start/End: Complemental strand, 302008 - 301778
Alignment:
| Q |
50 |
ctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagatgattcggtaaacataaacatagatagcatatataag |
149 |
Q |
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| T |
302008 |
ctgatttcgcaacaccacaagttgttagaaaagcaaatcaaaaccattatgaaagcaagaagatgattcggtaaacataaacatagatagcatatataag |
301909 |
T |
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| Q |
150 |
agtttcacnnnnnnnncttcaattatagtaaagtaaagtaaaccattatgaaacaaagatctatgc---agtaaatatagagcctgtaaaatttaggata |
246 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
301908 |
agtttcacttttttttcttcaattatagtaaagtaaagtaaaccattatgaaacaaagatctatgcagtagtaaatatagagcctgtaaaatttaggata |
301809 |
T |
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| Q |
247 |
tcaatattcactatttcatagagcctgtaaa |
277 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
301808 |
tcaatattcactatttcatagagcctataaa |
301778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 300651 - 300607
Alignment:
| Q |
180 |
aagtaaagtaaaccattatgaaacaaagatctatgcagtaaatat |
224 |
Q |
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| T |
300651 |
aagtaaagtaaaccattatgaaacaaagatctatgcagtaaatat |
300607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 301735 - 301695
Alignment:
| Q |
274 |
taaatttatgatcttggatgcaaaatgcacaaaaataaaga |
314 |
Q |
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| T |
301735 |
taaatttataatcttggatgcaaaatgcacaaaaataaaga |
301695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 32309663 - 32309554
Alignment:
| Q |
19 |
tgtcctccaacagcaaggaagcatcacagccctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagatgattc |
118 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
32309663 |
tgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccacaagtagttagaacaacaaatcaaaaccattatgaaagcaagaagatgattt |
32309564 |
T |
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| Q |
119 |
ggtaaacata |
128 |
Q |
| |
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||||||||| |
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| T |
32309563 |
agtaaacata |
32309554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 32814794 - 32814903
Alignment:
| Q |
19 |
tgtcctccaacagcaaggaagcatcacagccctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagatgattc |
118 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||| |
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| T |
32814794 |
tgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgattt |
32814893 |
T |
|
| Q |
119 |
ggtaaacata |
128 |
Q |
| |
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||||||||| |
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|
| T |
32814894 |
agtaaacata |
32814903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 32565171 - 32565280
Alignment:
| Q |
19 |
tgtcctccaacagcaaggaagcatcacagccctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagatgattc |
118 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||| | |||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||| |
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| T |
32565171 |
tgtcttccaatagcaaggaagcatcacaaccctgatttagaaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgattt |
32565270 |
T |
|
| Q |
119 |
ggtaaacata |
128 |
Q |
| |
|
||||||||| |
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|
| T |
32565271 |
agtaaacata |
32565280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 32305525 - 32305429
Alignment:
| Q |
24 |
tccaacagcaaggaagcatcacagccctgatttcgcaacaccac---aagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagatgatt |
117 |
Q |
| |
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||||| ||||||||||||||||| ||||||||| |||||||||| |||| ||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
32305525 |
tccaatagcaaggaagcatcacatccctgatttggcaacaccaccacaagtagttagaacagcaaatcaaagccattatgaaagcaagaagatgatt |
32305429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28220874 - 28220815
Alignment:
| Q |
19 |
tgtcctccaacagcaaggaagcatcacagccctgatttcgcaacaccacaagttgttaga |
78 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
28220874 |
tgtcctccaacaacaaggaagcatcacaaccctgattcagcaacaccacaagtagttaga |
28220815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 38238862 - 38238904
Alignment:
| Q |
182 |
gtaaagtaaaccattatgaaacaaagatctatgcagtaaatat |
224 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
38238862 |
gtaaagtaaaccattatgaaacaaaggtctatacagtaaatat |
38238904 |
T |
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