View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_25 (Length: 321)
Name: NF14023_low_25
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 40662539 - 40662244
Alignment:
| Q |
12 |
agataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggttcagtcccttttgcatgatcatgaaacaagtcttgtgaa |
111 |
Q |
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| T |
40662539 |
agataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatttgtggttcagtcccttttgcatgatcatgaaacaagtcttgtgaa |
40662440 |
T |
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| Q |
112 |
ttgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatctctgattgattaagaagat |
211 |
Q |
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| T |
40662439 |
ttgtgggtcgtcctgcaaatccaagtattctactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatctctgattgattaagaagat |
40662340 |
T |
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| Q |
212 |
tgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggttaattacatttac |
307 |
Q |
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| T |
40662339 |
tgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggttaattacatttac |
40662244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 96 - 307
Target Start/End: Complemental strand, 40675996 - 40675786
Alignment:
| Q |
96 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttgtttcaaagaatctct |
195 |
Q |
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| T |
40675996 |
aaacaagttttgtgaattgtcgatcatcctgcaaatcagag-attctactttgaatataatgggaaaaaccacttctctcctttgtttcaaagtttctct |
40675898 |
T |
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| Q |
196 |
gattgattaagaagattgctcttgcacattgtagccattctttatttgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtt |
295 |
Q |
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| T |
40675897 |
ggttgattaagaagattgcacttgcacattgcagccattctttatctgctctgcaattcatattactatttgtatacatggatgattgtgagtggtggtt |
40675798 |
T |
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| Q |
296 |
aattacatttac |
307 |
Q |
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|||||||||||| |
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| T |
40675797 |
aattacatttac |
40675786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 40676104 - 40676029
Alignment:
| Q |
12 |
agataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggtt--cagtcccttttg |
85 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||| |
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| T |
40676104 |
agatatgaatacacagaagatgctctagaaagtaaatagtgaaagaatcctgatttatggttcacagtcccttttg |
40676029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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