View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_29 (Length: 280)
Name: NF14023_low_29
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 1453095 - 1452846
Alignment:
| Q |
17 |
ccatggtcatgttcagaaacattgt--tttcacaattttttgtttcactaaattagagaaattttatattatgaagaaaactaaaccgctcaaagttctc |
114 |
Q |
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| T |
1453095 |
ccatggtcatgtttagaaacattgtgttttcacaatttttttttccactaaattagagaaattttatattatgaagaaaactaaaccgctcaaag---tc |
1452999 |
T |
|
| Q |
115 |
ctcttccaaagctctctattctttccacctctccttcttcnnnnnnnaaacccttcctttccctccccctctcctacaaactcgcaacgagggcccttga |
214 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| || ||||| || |
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| T |
1452998 |
ctcttctaaagctctctattctttccacttctccttctt--ttttttaaacccttccttcccctccccctctcctacaaactcgcaactagagccctaga |
1452901 |
T |
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| Q |
215 |
gtatannnnnnncttccccttttaggggagttttagagtattcttttgttaaagta |
270 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1452900 |
gtat-tttttttcttccccttttaggggagttttagagtattcttttgttaaagta |
1452846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 51936357 - 51936393
Alignment:
| Q |
62 |
ctaaattagagaaattttatattatgaagaaaactaa |
98 |
Q |
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| T |
51936357 |
ctaaattagagagattttgtattatgaagaaaactaa |
51936393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 8828557 - 8828479
Alignment:
| Q |
64 |
aaattagagaaattttatattatgaagaaaactaaaccgctcaaagttctcctcttccaaagctctctattctttccac |
142 |
Q |
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| T |
8828557 |
aaattagaggaattttgtattatgaagaaaattaaaccccgcaaagctctcccctctcaaagctcttcattctttccac |
8828479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 19154064 - 19153986
Alignment:
| Q |
64 |
aaattagagaaattttatattatgaagaaaactaaaccgctcaaagttctcctcttccaaagctctctattctttccac |
142 |
Q |
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||||||| | |||| | |||||||||||||||||| || ||||||| |||| || ||||||||||| ||||||||||| |
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| T |
19154064 |
aaattaggggaattctgtattatgaagaaaactaagcccctcaaagccctcccctcccaaagctctccattctttccac |
19153986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 6973664 - 6973730
Alignment:
| Q |
75 |
attttatattatgaagaaaactaaaccgctcaaagttctcctcttccaaagctctctattctttccac |
142 |
Q |
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| T |
6973664 |
attttatattacgaagaaaattaaacccctgaaagtcctcc-ctcccaaagctctccattctttccac |
6973730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 22845285 - 22845352
Alignment:
| Q |
75 |
attttatattatgaagaaaactaaaccgctcaaagttctcctcttccaaagctctctattctttccac |
142 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||| |||| || ||||||||| ||||||||||| |
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| T |
22845285 |
attttgtattatgaagaaaactaaacccctcaaagccctcccctctcaaagctcttcattctttccac |
22845352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 31601895 - 31601858
Alignment:
| Q |
64 |
aaattagagaaattttatattatgaagaaaactaaacc |
101 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
31601895 |
aaattatagagattttatattatgaagaaaactaaacc |
31601858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 37909003 - 37908934
Alignment:
| Q |
75 |
attttatattatgaagaaaactaaaccgctcaaagttctcctcttccaaagctctctattctttccacct |
144 |
Q |
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||||| |||||||||||||| |||||| | ||||| ||||||| ||||| | ||| ||||||||||||| |
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| T |
37909003 |
attttgtattatgaagaaaattaaaccccccaaagccctcctctgccaaaacactcgattctttccacct |
37908934 |
T |
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