View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_30 (Length: 277)
Name: NF14023_low_30
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 29203927 - 29204182
Alignment:
| Q |
7 |
gggccggccctgattaggtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttgaaatcttctgc |
106 |
Q |
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| T |
29203927 |
gggccggccctgattaggtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttgaaatcttctgc |
29204026 |
T |
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| Q |
107 |
accatgtagagaaaaatatttaactctttgagagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgat |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204027 |
accatgtagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgat |
29204126 |
T |
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| Q |
207 |
gatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204127 |
gatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaac |
29204182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 12647949 - 12647694
Alignment:
| Q |
7 |
gggccggccctgattaggtagtataaacagaaaattgtgttcccannnnnnnnnnnnnnnnnnnnnnactgctatcataataatgcttgaaatcttctgc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12647949 |
gggccggccctgattaggtagtataaacagaaaattgtgttcccattttttgagatttttttcttttactgctatcataataatgcttgaaatcttctgc |
12647850 |
T |
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| Q |
107 |
accatgtagagaaaaatatttaactctttgagagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgat |
206 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647849 |
accatatagagaaaaatatttaactctttgtgagcaaatacacgatgaaagggcagaatcatcaaatagcatggctgatgaagagagttcagtggatgat |
12647750 |
T |
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| Q |
207 |
gatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647749 |
gatacaatccgtagccttcgtgctagcccaattaatggtttttctaaggacagaac |
12647694 |
T |
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