View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14023_low_34 (Length: 259)
Name: NF14023_low_34
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 39943192 - 39943078
Alignment:
| Q |
140 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcagttgcttttatactgtatagtttataatccaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39943192 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcggttgcttttatactgtatagtttataatccaa |
39943093 |
T |
|
| Q |
240 |
atgcatcctttgtta |
254 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39943092 |
atgcatcctttgtta |
39943078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 39943325 - 39943258
Alignment:
| Q |
7 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39943325 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
39943258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 28739623 - 28739690
Alignment:
| Q |
7 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28739623 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28739690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 28749565 - 28749632
Alignment:
| Q |
7 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28749565 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28749632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 28753578 - 28753645
Alignment:
| Q |
7 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28753578 |
atatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtaaaacctgttatgtac |
28753645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 28739754 - 28739860
Alignment:
| Q |
141 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
232 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
28739754 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28739853 |
T |
|
| Q |
233 |
aatccaa |
239 |
Q |
| |
|
||||||| |
|
|
| T |
28739854 |
aatccaa |
28739860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 28749696 - 28749802
Alignment:
| Q |
141 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
232 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
28749696 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28749795 |
T |
|
| Q |
233 |
aatccaa |
239 |
Q |
| |
|
||||||| |
|
|
| T |
28749796 |
aatccaa |
28749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 28753709 - 28753815
Alignment:
| Q |
141 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
232 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
28753709 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattaagaacatagaggtttcagtttcggtcagcttttatattgtgtagtttat |
28753808 |
T |
|
| Q |
233 |
aatccaa |
239 |
Q |
| |
|
||||||| |
|
|
| T |
28753809 |
aatccaa |
28753815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University