View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14023_low_36 (Length: 253)

Name: NF14023_low_36
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14023_low_36
NF14023_low_36
[»] chr2 (8 HSPs)
chr2 (86-240)||(32565380-32565534)
chr2 (86-240)||(32806565-32806719)
chr2 (86-240)||(32815002-32815156)
chr2 (86-240)||(32309301-32309455)
chr2 (115-240)||(32799640-32799765)
chr2 (91-240)||(28215617-28215766)
chr2 (91-240)||(28220458-28220604)
chr2 (86-129)||(32305344-32305387)
[»] chr6 (2 HSPs)
chr6 (86-240)||(301447-301601)
chr6 (1-43)||(301644-301686)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 32565380 - 32565534
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 185  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32565380 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32565479  T
Q  186 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32565480 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 32565534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 32806565 - 32806719
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 185  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32806565 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32806664  T
Q  186 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806665 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 32806719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 32815002 - 32815156
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 185  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32815002 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatc 32815101  T
Q  186 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815102 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 32815156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 32309455 - 32309301
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 185  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32309455 ttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatc 32309356  T
Q  186 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32309355 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 32309301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 32799640 - 32799765
Alignment:
Q  115 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcagcttgagggcaagaatccctataga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga 32799739  T
Q  215 aattatattgaagattggaaccatct 240  Q
    ||||||||||||||||||||||||||    
T  32799740 aattatattgaagattggaaccatct 32799765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 28215617 - 28215766
Alignment:
Q  91 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcag 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||  ||||    
T  28215617 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattctcag 28215716  T
Q  191 cttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    ||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  28215717 cttcagggcaagaatccttatagaaattatatcgaagattggaaccatct 28215766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 28220604 - 28220458
Alignment:
Q  91 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatcttcag 190  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||  ||||    
T  28220604 tggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattctcag 28220508  T
Q  191 cttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||    
T  28220507 cttgagggcaagaaaccttatagaaattatattgaagattggaaccatct 28220458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 32305387 - 32305344
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaa 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32305387 ttacctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 301601 - 301447
Alignment:
Q  86 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacaaacaatatc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  301601 ttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatc 301502  T
Q  186 ttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatct 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  301501 ttcagcttgagggctagaatccctatagaaattatattgaagattggaaccatct 301447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 301686 - 301644
Alignment:
Q  1 ttccaccacataactgaagaacaataaagactccattttcaca 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  301686 ttccaccacataactgaagaacaataaagactccattttcaca 301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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