View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14023_low_4 (Length: 563)
Name: NF14023_low_4
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_4 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 563
Target Start/End: Original strand, 5350608 - 5351166
Alignment:
| Q |
5 |
acaatttgagttccctagtctaatctagcagacatatatgaacaatacaacttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350608 |
acaatttgagttccctagtctaatctagcagacatatatgaacaatacaacttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacat |
5350707 |
T |
|
| Q |
105 |
gggagcattgaaaatggaagatgtgaaacctgagaaaaattctttagaagcctttagtccaagatgggctaccaatacagacctcaagtaagcaaaaata |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350708 |
gggagcattgaaaatggaagaagtgaaacctgagaaaaattctttagaagcctttagtccaagatgggctaccaatacagacctcaagtaagcaaaaata |
5350807 |
T |
|
| Q |
205 |
gcactaagaattgacattgcagtgtaaactccaaccatccagcctttagtgatgcttggaaattcacttgatagagcaatccaataagatgcaccagctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350808 |
gcactaagaattgacattgcagtgtaaactccaaccatccagcctttagtgatgcttggaaattcacttgatagagcaatccaataagatgcaccagctg |
5350907 |
T |
|
| Q |
305 |
aaaaagcagcaaaacctaacaatgctattaagcttaaaaactgaagaagcattcccttggagattataatgtaatccaagtacagttcccatccagaact |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350908 |
aaaaagcagcaaaacctaacaatgctattaagcttaaaaactgaagaagcattcccttggagattataatgtaatccaagtacagttcccatccagaact |
5351007 |
T |
|
| Q |
405 |
tccaatttctatatattcttcttgagtaagttgttgccctccgataattgtctcacatatttcgtcattgttgtttttcttagtagcaggatcactaact |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351008 |
tccaatttctatatattcttcttgagtaagttgttgcccgccgatacttgtctcacatatttcatcattgttgtttttcttagtagcaggatcactaact |
5351107 |
T |
|
| Q |
505 |
ctttctatttcttgactttttcctttgttttgactacttgtagtacctattacagatat |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351108 |
ctttctatttcttgactttttcctttgttttgactacttgtagtacctattacagatat |
5351166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 5289332 - 5289393
Alignment:
| Q |
55 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
116 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
5289332 |
cttactcttgtcaaaatccttccaacaggagttgaatcaaagaaaagcatcggagcattgaa |
5289393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 14948537 - 14948598
Alignment:
| Q |
55 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
14948537 |
cttactctagttaaaattcttcccacaggagttgaatcaaagaaaagcattggagcattgaa |
14948598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 15126815 - 15126754
Alignment:
| Q |
55 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
15126815 |
cttactctagttaaaattcttcctacaggagttgaatcaaagaaaagcattggagcattgaa |
15126754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University