View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_42 (Length: 237)
Name: NF14023_low_42
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 34421121 - 34420912
Alignment:
| Q |
13 |
gaagcatagggggacaactggagcgaagaactaaatactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagcagttaaacttggga |
112 |
Q |
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| T |
34421121 |
gaagcatcgggggacaactggagcgaagaactaaatactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagcagttaaacttggga |
34421022 |
T |
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| Q |
113 |
tgatctattgttagaaatataaataaaatttgtattgctaaatttatttttgaaacaagtttctataataaatattgttcaaaataattatgcaatattg |
212 |
Q |
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| T |
34421021 |
tgatctattgttagaaatataaataaaattcgtattgctaaatttattttttaaacaagtttctataataaatattgttcaaaataattatgcaatattg |
34420922 |
T |
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| Q |
213 |
cagtgtttat |
222 |
Q |
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|||||||||| |
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| T |
34420921 |
cagtgtttat |
34420912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 34429331 - 34429218
Alignment:
| Q |
22 |
ggggacaactggagcgaagaactaaatactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagc----agttaaacttgggatgatc |
117 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||| ||| ||||| ||| | ||||||| ||| ||||||| |
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| T |
34429331 |
gggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggattggcagcttcaattaagaaatcaatgagttaaatttgagatgatc |
34429232 |
T |
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| Q |
118 |
tattgttagaaata |
131 |
Q |
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|||||||| ||||| |
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| T |
34429231 |
tattgttataaata |
34429218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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