View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_6 (Length: 557)
Name: NF14023_low_6
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 2 - 542
Target Start/End: Complemental strand, 48882446 - 48881905
Alignment:
| Q |
2 |
gaagcataggttacagaaattgcgaaagtggggtccagtgaggtgtggtatgtgattaatttgactgatgataatcacccacttcatattcatttgggtt |
101 |
Q |
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| T |
48882446 |
gaagcacaggttacagaaattgcgaaagtggggtccagtgaggtgtggtatgtgattaatttgactgatgataatcacccacttcatattcatttgggtt |
48882347 |
T |
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| Q |
102 |
tgtttaaggttttggatcagaccgagcttgtgaaatctgatgaatttaaggattgtatgacgaaaaataatgatgccgtgaagtgccacgtggatgagca |
201 |
Q |
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| T |
48882346 |
tgtttaaggttttggatcagaccgagctagtgaaatctgatgaatttaaggattgtatgacgaaaaataatgatgctgtgaagtgccacgtggatgagca |
48882247 |
T |
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| Q |
202 |
tgcacgtgggaagaaagttaaggtgcctgattatgagaaagggtggaagaatgtgtttaagatgagacctgggtttgttacaaagattgttgttaggttt |
301 |
Q |
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| T |
48882246 |
tgcacgtgggaagaaagttaaggtgcctgattatgagaaagggtggaagaatgtgtttaagatgagacctgggtttgttacaaagattgttgttaggttt |
48882147 |
T |
|
| Q |
302 |
gcttacatacataccaatgcaacgtatgggtttgatgcaactaaggagtctggttacgtgtatcattgtcatgtaagtgcttataatata-nnnnnnngt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48882146 |
gcttacatacataccaatgcaacgtatgggtttgatgcaactaaggagtctggttacgtgtatcattgtcatgtaagtgcttataatatattttttttgt |
48882047 |
T |
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| Q |
401 |
aacaattattaaaaatatacatgtattgatcctcattttgatgtagatattggaccatgaagacaatgctatgatgagacccttgaagatgatcaagtga |
500 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48882046 |
aacaattattaaaaatatacatgtattgatactcattttgatgtagatattggaccatgaagacaatgctatgatgagacccttgaagatgatcaagtga |
48881947 |
T |
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| Q |
501 |
agcttctccaatgataatataggtgcatatttcattatatgt |
542 |
Q |
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| T |
48881946 |
agcttctccaatgataatataggtgcatatttcattatatgt |
48881905 |
T |
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