View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14023_low_8 (Length: 517)
Name: NF14023_low_8
Description: NF14023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14023_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 20960639 - 20961135
Alignment:
| Q |
1 |
agcattatatcaaaagtttctgtaccagaactgcatgataactgttgacatgaaaattagtgagaaaataaaaaggattgttttttctcactcagaaact |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960639 |
agcattatatcaaaagtttttgtaccagaactgcatgataactgttgacatgaaaattagtgagaaaataaaaaggattgttttttctcactcagaaact |
20960738 |
T |
|
| Q |
101 |
cttcaaattggaaaccagagacaaactcctactctagaaaagtaactggcatttattagagacaagccctgactcagtgggctcaagcaacnnnnnnnnt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20960739 |
cttcaaattggaaactagagacaaactcctactctagaaaagtaactggcatttattagagacaagccctgactcagtgggctcaagcaacaaaaaaa-t |
20960837 |
T |
|
| Q |
201 |
acaaggaaagagatggccatatctttctcattcactgcaaaaccaaacagaaatcgtttcatcatgactatttgcacatcaaactgcaaataggccccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960838 |
acaaggaaagagatggccatatctttctcattcactgcaaaaccaaacagaaatcgtttcatcatgactatttgcacatcaaactgcaaataggccccat |
20960937 |
T |
|
| Q |
301 |
gtatgtatatgacacacctttgctaacacgacacatgagagttatggctgctggtcttactattgtcaaaatcatttcatcttgactattatggagcaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20960938 |
gtatgtatatgacacacctttgctaacacgacacatgagagttatgactgctggtattactattgtcaaaatcatttcatcttgactattatggagcaaa |
20961037 |
T |
|
| Q |
401 |
atatgtgacatatcttaagcataatcaacaaagaccagaaatattcgctgatgctcaacaaagaccagaatcattcgctcatgaaaaacacatattca |
498 |
Q |
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| T |
20961038 |
atatgtgacatatcttaagcataatcaacaaagaccagaaatattcgctgatgctcaacaaagaccagaatcattcgctcatgaaaaacacacattca |
20961135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 498
Target Start/End: Original strand, 21012031 - 21012509
Alignment:
| Q |
7 |
atatcaaaagtttctgtaccagaactgcatgataactgttgacatgaaaattagtgagaaaataaaaaggattgttttttctcactcagaaactctt-ca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| || |
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| T |
21012031 |
atatcaaaagtttctgtaccagaactgcatgataactgttgacatgaaaattagtgagaaaataaaaaggtttgtttttgctcactca--aactctttca |
21012128 |
T |
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| Q |
106 |
aattggaaaccagagacaaactcctactctagaaaagtaactggcatttattagagacaagccctgactcagtgggctcaagcaacnnnnnnnnt-acaa |
204 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||| |
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| T |
21012129 |
aattggaaactagagacaaactcctactctagaagagtaactggcatttattggagacaaaccctgactcagtgggctcaagcaacaaaaaaaattacaa |
21012228 |
T |
|
| Q |
205 |
ggaaagagatggccatatctttctcattcactgcaaaaccaaacagaaatcgtttcatcatgactatttgcacatcaaactgcaaataggccccatgta- |
303 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||| |
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| T |
21012229 |
ggaaagagatagccatatctttctcattcactgcaaaaccaaacagaaatc--tgcaaca------------catcaaactgcaaataggccccatgtaa |
21012314 |
T |
|
| Q |
304 |
tgtatatgacacacctttgctaacacgacacatgagagttatggctgctggtcttactattgtcaaaatcatttcatcttgactattatggagcaaaata |
403 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21012315 |
tgtatatgacacacctttcctaacacgacacatgagagttatggctgctggtattgttatagtcaaaatcatttcatcttgactattatggagcaaaata |
21012414 |
T |
|
| Q |
404 |
tgtgacatatcttaagcataatcaacaaagaccagaaatattcgctgatgctcaacaaagaccagaatcattcgctcatgaaaaacacatattca |
498 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
21012415 |
tatgacatatcttaagcataatcaacaaagaccagaaatattcgctcatgctcaacaaagaccaaaaatattcgctcatgaaaaacacacattca |
21012509 |
T |
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