View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14024_high_4 (Length: 382)
Name: NF14024_high_4
Description: NF14024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14024_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 365
Target Start/End: Original strand, 51843628 - 51843936
Alignment:
| Q |
50 |
atatcaacaaaatgtgaataatgtagttgtccacattttagaaaagtaacgcaccaactaatccaacatattgactgtaactactaagggactaaatcac |
149 |
Q |
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| T |
51843628 |
atatcaacaaaatgtgaataatgtagttgtccacattttaaaaaagtaacgcaccaactaatccaacatattgactgtaactactaagggactaaaccac |
51843727 |
T |
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| Q |
150 |
ttcacctacatacaatcgattgatataatgtatataaattatcaactatatagaatatagaaattaattatttggcccatcaaaatnnnnnnnnntcaag |
249 |
Q |
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| T |
51843728 |
ttcacctacatacaatcgattgatataacgtgtatcaattatcaact-------atatagaaattaattatttggcccatcaaaataaaaaaaaatcaag |
51843820 |
T |
|
| Q |
250 |
cttagccactgacactcataataatcttggtttcaatatggattgttttggtggtagaaggaacaacactattgctaatgtagtcttttgcacacataat |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51843821 |
cttagccactgacactcataataatcttggtttcaatagggattgttttggtggtagaaggaacaacacaattgctaatgtagtcttttgcacacataat |
51843920 |
T |
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| Q |
350 |
ttttgttgtcaccaag |
365 |
Q |
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|||||||||||||||| |
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| T |
51843921 |
ttttgttgtcaccaag |
51843936 |
T |
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