View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14024_low_5 (Length: 354)
Name: NF14024_low_5
Description: NF14024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14024_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 47476893 - 47477228
Alignment:
| Q |
1 |
ctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccac |
100 |
Q |
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| T |
47476893 |
ctatttgtaaagctgtgataggatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccac |
47476992 |
T |
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| Q |
101 |
cagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476993 |
cagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactc |
47477092 |
T |
|
| Q |
201 |
aaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacgtg |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47477093 |
aaccctacaagaccagtttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacttg |
47477192 |
T |
|
| Q |
301 |
ttgccgtgtactatgctcaaatcaaatactagtttt |
336 |
Q |
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| T |
47477193 |
ttgccgtgtactatgctcaaatcaaatactagtttt |
47477228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 47473595 - 47473874
Alignment:
| Q |
1 |
ctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccac |
100 |
Q |
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||||||||| ||| ||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473595 |
ctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttccctcttccac |
47473694 |
T |
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| Q |
101 |
cagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactc |
200 |
Q |
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| T |
47473695 |
cagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactc |
47473794 |
T |
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| Q |
201 |
aaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatat |
280 |
Q |
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| T |
47473795 |
aaccctagaaaaccagcttatcaaggtatgggagtctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 47486312 - 47486483
Alignment:
| Q |
3 |
atttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccacca |
102 |
Q |
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||||||| ||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| |
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| T |
47486312 |
atttgtacagctgtgatgggatgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatacttcacttttccttcttccacca |
47486411 |
T |
|
| Q |
103 |
gtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
174 |
Q |
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||| ||||||||||||||| ||| | || |||||||||||||| ||||||||| |||||| || ||||| |
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| T |
47486412 |
acttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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