View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14024_low_6 (Length: 319)

Name: NF14024_low_6
Description: NF14024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14024_low_6
NF14024_low_6
[»] chr7 (7 HSPs)
chr7 (1-303)||(22534059-22534361)
chr7 (5-303)||(22525505-22525803)
chr7 (182-228)||(7327775-7327821)
chr7 (182-233)||(20456102-20456153)
chr7 (245-300)||(24391071-24391126)
chr7 (263-297)||(20414584-20414618)
chr7 (264-302)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (179-300)||(8199-8320)
scaffold0128 (182-283)||(25251-25352)
scaffold0128 (179-220)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (248-300)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (182-228)||(2910627-2910673)
chr4 (182-222)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (245-297)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 22534059 - 22534361
Alignment:
Q  1 caacgtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534059 caacgtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgc 22534158  T
Q  101 ttctggaaccctgccacgagaacaatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataatt 200  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22534159 ttctggaaccccgccacgagaacaatatctgatatattaagaactgatttcagttgggatgattgggaatttcatccgttcgtgtttggttatgataatt 22534258  T
Q  201 caaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534259 caaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 22534358  T
Q  301 tga 303  Q
    |||    
T  22534359 tga 22534361  T

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Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 22525803 - 22525505
Alignment:
Q  5 gtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgcttct 104  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||  || |||||| ||||||||||    
T  22525803 gtagttcccattattcttggttcatgcaatggattgcttttcttgcgcggttatggtcatggtgagggtactaaatttaaaaaagtattatgccgcttct 22525704  T
Q  105 ggaaccctgccacgagaacaatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaac 204  Q
    | ||||| || ||||||||||||||||||||||| ||||||||||||  ||  |||||||| |||||| ||   || |||||||||||||||||||||||    
T  22525703 gaaaccccgctacgagaacaatatccgatatattgagaactgatttcgattatgatgattgcgaattttatgagtttgtgtttggttatgataattcaac 22525604  T
Q  205 cgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 303  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  22525603 cgacacctataaagttgtagccttaaattcaggcggtaatgatgtgagagtcattaccatgggtgataatgtttggagaactattaaaacttttcctga 22525505  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 7327775 - 7327821
Alignment:
Q  182 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 228  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  7327775 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 7327821  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 20456102 - 20456153
Alignment:
Q  182 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 233  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  20456102 gtgttttgttttgataattcaaccgacacatataaggttgtggccttgaatt 20456153  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 24391071 - 24391126
Alignment:
Q  245 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 300  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  24391071 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 20414584 - 20414618
Alignment:
Q  263 ttgggtgataatgtttggagaactattaaaagttt 297  Q
    |||||||||||||||||||||| ||||||||||||    
T  20414584 ttgggtgataatgtttggagaagtattaaaagttt 20414618  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 46769050 - 46769088
Alignment:
Q  264 tgggtgataatgtttggagaactattaaaagttttcctg 302  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  46769050 tgggtgataatatttggagaactattcaaagttttcctg 46769088  T

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Target: scaffold0128 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 8199 - 8320
Alignment:
Q  179 ttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgttt 278  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||   ||||| ||  ||||||||||||  ||||||||||||||||    
T  8199 ttcgtgtttggttatgatagttcaaccgacacttataaagttgtggccttaagttcaactggtaacgaaatgagagtctttagtttgggtgataatgttt 8298  T
Q  279 ggagaactattaaaagttttcc 300  Q
    |||||  |||| |||| |||||    
T  8299 ggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 25251 - 25352
Alignment:
Q  182 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgga 281  Q
    |||||||||||||| | || ||| ||||| |||||||||||  | |||| ||||   ||||| || |||| ||||||||  |||||||||||||||||||    
T  25251 gtgtttggttatgagagtttaactgacacttataaggttgtgtcattaagttcaactggtaacgaagtgaaagtctttagtttgggtgataatgtttgga 25350  T
Q  282 ga 283  Q
    ||    
T  25351 ga 25352  T

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Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 3740 - 3781
Alignment:
Q  179 ttcgtgtttggttatgataattcaaccgacacctataaggtt 220  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3740 ttcgtgtttgtttatgataattcaaccgacatttataaggtt 3781  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  248 gtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 300  Q
    |||||||||||||  ||||  ||||||||||||||||||||| ||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 2910627 - 2910673
Alignment:
Q  182 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 228  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 11982135 - 11982095
Alignment:
Q  182 gtgtttggttatgataattcaaccgacacctataaggttgt 222  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  11982135 gtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  245 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttt 297  Q
    ||||||||||| || |  |||||||||||||||||||||| |||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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