View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14024_low_8 (Length: 267)
Name: NF14024_low_8
Description: NF14024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14024_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19197683 - 19197941
Alignment:
| Q |
1 |
tatcatttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgtttttgaactttgaaaaagttatgaataagacacaa |
100 |
Q |
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| T |
19197683 |
tatcatttcagacttattgttcatactagactgctaattgttttacagatagcatctactcatgttttttaactttgaaaaagttatgaataaggcacaa |
19197782 |
T |
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| Q |
101 |
atttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataa |
200 |
Q |
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| T |
19197783 |
atttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacctaataa |
19197882 |
T |
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| Q |
201 |
agagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttct |
259 |
Q |
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| T |
19197883 |
agagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttct |
19197941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19201663 - 19201925
Alignment:
| Q |
1 |
tatcatttcagacttattgttcatactagactgctaattgttttacagatagca---tctactc--atgtttttgaactttgaaaaagttatgaataaga |
95 |
Q |
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| T |
19201663 |
tatcattccagacttattgttcatactagacagctaattgttttgcacatagcaccatctactctcatgtttt-gaactgtgaaaaagttatgaataaga |
19201761 |
T |
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| Q |
96 |
cacaaatttaacaagacctagaacattatctaattttaggtaaggaagcatttcatgacctgcttaaagaaagcaaaaatgaattagatctatgaaacct |
195 |
Q |
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| T |
19201762 |
cacaaatttaacaagacctagaacattatctgattttacctaaggaagcatttcatgacatgcttaaagaaagattaaatgcataagatctattaaacct |
19201861 |
T |
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| Q |
196 |
aataaagagtgtctgagagaaacctgttgcttcattagctcgcgtttggcttttatcttcttct |
259 |
Q |
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| T |
19201862 |
aataaagagtgtctgagaaaaacctcttgcttcattagcttgcgttttgctttcatcctcttct |
19201925 |
T |
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