View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14025_low_1 (Length: 432)

Name: NF14025_low_1
Description: NF14025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14025_low_1
NF14025_low_1
[»] chr7 (13 HSPs)
chr7 (14-414)||(29068597-29068997)
chr7 (262-414)||(28956915-28957067)
chr7 (28-405)||(29077802-29078183)
chr7 (264-400)||(29071309-29071445)
chr7 (262-405)||(29110791-29110934)
chr7 (264-414)||(29058081-29058231)
chr7 (264-414)||(3617388-3617538)
chr7 (262-400)||(3619127-3619265)
chr7 (262-399)||(29073202-29073339)
chr7 (262-399)||(29102165-29102302)
chr7 (262-399)||(29116310-29116447)
chr7 (264-403)||(29066870-29067009)
chr7 (323-398)||(29098442-29098517)
[»] chr4 (3 HSPs)
chr4 (74-414)||(11854427-11854766)
chr4 (264-400)||(11851727-11851863)
chr4 (262-399)||(11849829-11849966)
[»] chr3 (1 HSPs)
chr3 (274-414)||(24241017-24241151)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 29068597 - 29068997
Alignment:
Q  14 catcatgctactagtcaatcattatttataagtacaaaatatcattaaagggagaatttggagtaatgatataaaggcaaatattctattttcgatttga 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29068597 catcatgctactagtcaaccattatttataagtacaaaatatcattaaagggagaatttggagtattgatataaaggcaaatattctattttcgatttga 29068696  T
Q  114 gctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatgatacatatacacatgatgagaaataaaagtacaaaataag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29068697 gctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatgatacatatacacatgatgagaaataaaagtacaaaataag 29068796  T
Q  214 taacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29068797 taacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggc 29068896  T
Q  314 acatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29068897 acatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcac 29068996  T
Q  414 a 414  Q
    |    
T  29068997 a 29068997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 262 - 414
Target Start/End: Complemental strand, 28957067 - 28956915
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||| |||||||||||||||||||||||||||||| |||    
T  28957067 atatcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgttt 28956968  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatccctttctggagtcaca 414  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  28956967 ggacaaggaggttggtaatcatgttcttcatcacatccctttgtggagtcaca 28956915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 405
Target Start/End: Original strand, 29077802 - 29078183
Alignment:
Q  28 tcaatcattatttataagtacaaaatatcattaaagggagaatttggagtaatgatataaaggcaaatattctattttcgatttgagctatatcaataaa 127  Q
    |||||||||||||||||||||| | | ||| ||||| || |||||| |||| ||||||||| |||||| ||  ||||  ||||||| ||  |||||||||    
T  29077802 tcaatcattatttataagtacatatt-tcaataaagaga-aatttgcagtattgatataaaagcaaatgttaaatttaggatttgaactcaatcaataaa 29077899  T
Q  128 agtatgtactgtattttcttaat----aacagaatggtcacaagta-tatgatacatatacacatgatgagaaataaaagtacaaaataagtaacatgac 222  Q
    |||||||  |||||||||| |||    ||||||||||  ||||  | ||| ||||||| ||| ||||| | ||||||||||||| |||| |    || ||    
T  29077900 agtatgtgttgtattttctaaatttataacagaatggcaacaacaagtattatacatagacatatgataa-aaataaaagtacagaatatg----atcac 29077994  T
Q  223 taagttaaaccatagaaacacgaacaaggatttcaactc------atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcaca 316  Q
    ||| ||||||||||||||||| |||| | ||||  |  |      || ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29077995 taaattaaaccatagaaacacaaacatgaatttttaacctaaaaaatttcaagcatctgaccatgtaatgtcaaggccaccccattgttctttaggcaca 29078094  T
Q  317 tttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatccctttct 405  Q
      |||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||| ||||| ||||||||||||||||||||    
T  29078095 cctaaagctttccacacagctttggaagcatcaacaatgttgtttgtacaaggtggttggtagtcatgctgttcatcacatccctttct 29078183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 29071309 - 29071445
Alignment:
Q  264 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 363  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  29071309 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29071408  T
Q  364 acaaggaggttggtaatcatgttgttcatcacatccc 400  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29071409 acaaggaggttggtaatcatgttcttcatcacatccc 29071445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 262 - 405
Target Start/End: Original strand, 29110791 - 29110934
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||    
T  29110791 atatcaagcatctgaccatgtaatatcaagaccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgttt 29110890  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatccctttct 405  Q
    ||||| || |||||||| ||||| ||||||||||||||||||||    
T  29110891 ggacacggtggttggtagtcatgctgttcatcacatccctttct 29110934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 264 - 414
Target Start/End: Original strand, 29058081 - 29058231
Alignment:
Q  264 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 363  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  29058081 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29058180  T
Q  364 acaaggaggttggtaatcatgttgttcatcacatccctttctggagtcaca 414  Q
     ||||||||||| |||||||||| ||||||||||||| || | ||||||||    
T  29058181 gcaaggaggttgataatcatgttcttcatcacatcccattgttgagtcaca 29058231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 264 - 414
Target Start/End: Original strand, 3617388 - 3617538
Alignment:
Q  264 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 363  Q
    |||||||||||||||||||||| || |||||||||||||| |||| |||||||   || ||||||||||||||||| ||||||||||||||||| |||||    
T  3617388 atcaagcatctgaccatgtaatatctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttgg 3617487  T
Q  364 acaaggaggttggtaatcatgttgttcatcacatccctttctggagtcaca 414  Q
    ||||||||||||||||||||||| ||||||||||||| || | ||||||||    
T  3617488 acaaggaggttggtaatcatgttcttcatcacatcccattgtagagtcaca 3617538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 400
Target Start/End: Complemental strand, 3619265 - 3619127
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||| ||||||||||| || |  ||||||||||| || | ||| ||||  || |||||||||||||| || || |||||||| ||||| ||     
T  3619265 atatcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttg 3619166  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatccc 400  Q
      ||||||||||||||||||||||| || ||||||||||    
T  3619165 ttacaaggaggttggtaatcatgttctttatcacatccc 3619127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Complemental strand, 29073339 - 29073202
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29073339 atatcaagcatcggaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29073240  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatcc 399  Q
      |||||||||||| |||||||||| || ||| |||||    
T  29073239 ttacaaggaggttgataatcatgttctttatcgcatcc 29073202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Complemental strand, 29102302 - 29102165
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29102302 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29102203  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatcc 399  Q
      |||||||||||| |||||||||| || ||| |||||    
T  29102202 ttacaaggaggttgataatcatgttctttatcgcatcc 29102165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Complemental strand, 29116447 - 29116310
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  29116447 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 29116348  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatcc 399  Q
      |||||||||||| |||||||||| || ||| |||||    
T  29116347 ttacaaggaggttgataatcatgttctttatcgcatcc 29116310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 403
Target Start/End: Complemental strand, 29067009 - 29066870
Alignment:
Q  264 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 363  Q
    |||||||||| ||||||||||| || |  ||||||||||| |   | || |||  ||| ||||||||||||||| | |||||||||||||||||||| |     
T  29067009 atcaagcatcagaccatgtaatatccaacccaccccattgattccttgggacacctaaggctttccacacagccattgaagcatcaacaatgttattggc 29066910  T
Q  364 acaaggaggttggtaatcatgttgttcatcacatcccttt 403  Q
    ||| |||||||| || ||||||| | ||||||| ||||||    
T  29066909 acatggaggttgatactcatgttctgcatcacaccccttt 29066870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 29098517 - 29098442
Alignment:
Q  323 gctttccacacagccttggaagcatcaacaatgttatttggacaaggaggttggtaatcatgttgttcatcacatc 398  Q
    |||| ||| ||| ||||||| |||||||| ||||| ||  |||||||||||||||||||||| | || ||||||||    
T  29098517 gcttcccatacaaccttggaggcatcaactatgttgttgcgacaaggaggttggtaatcatgatctttatcacatc 29098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 74 - 414
Target Start/End: Complemental strand, 11854766 - 11854427
Alignment:
Q  74 gagtaatgatataaaggcaaatattctattttcgatttgagctatatcaataaaagtatgtactgtattttcttaataacagaatggtcacaagtatatg 173  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11854766 gagtattgatataaaggcaaatattctattttggatttgagctatatcaataaaagtatgtactgtattttct-aataacagaatggtcacaagtatatg 11854668  T
Q  174 atacatatacacatgatgagaaataaaagtacaaaataagtaacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854667 atacatatacacatgatgagaaataaaagtacaaaataagtaacatgactaagttaaaccatagaaacacgaacaaggatttcaactcatatcaagcatc 11854568  T
Q  274 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854567 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggt 11854468  T
Q  374 tggtaatcatgttgttcatcacatccctttctggagtcaca 414  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11854467 tggtaatcatgttgttcatcacatccctttctggagtcaca 11854427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 11851863 - 11851727
Alignment:
Q  264 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 363  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||   || ||||||||||||||||||||||||||||||||||| |||||    
T  11851863 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 11851764  T
Q  364 acaaggaggttggtaatcatgttgttcatcacatccc 400  Q
    ||||||||||||||||||||||| |||||||||||||    
T  11851763 acaaggaggttggtaatcatgttcttcatcacatccc 11851727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Original strand, 11849829 - 11849966
Alignment:
Q  262 atatcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttattt 361  Q
    |||||||||||| |||||||||||||| |  ||||||||||| || | |||||||   || |||||||||||||| || || |||||||| ||||| ||     
T  11849829 atatcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttg 11849928  T
Q  362 ggacaaggaggttggtaatcatgttgttcatcacatcc 399  Q
      |||||||||||| |||||||||| || ||| |||||    
T  11849929 ttacaaggaggttgataatcatgttctttatcgcatcc 11849966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 414
Target Start/End: Original strand, 24241017 - 24241151
Alignment:
Q  274 tgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaaggaggt 373  Q
    |||||||||||| |||||  |||||||||  || | |||||||  ||| |||||||| ||| |||||||||| |||||||||||      |||||||||     
T  24241017 tgaccatgtaatttcaagttcaccccatttgtcatgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtt------acaaggaggc 24241110  T
Q  374 tggtaatcatgttgttcatcacatccctttctggagtcaca 414  Q
    ||||||||||| | ||||||||||||| || || |||||||    
T  24241111 tggtaatcatgctcttcatcacatcccattgtgaagtcaca 24241151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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