View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14026_high_5 (Length: 322)
Name: NF14026_high_5
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14026_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 25619409 - 25619094
Alignment:
| Q |
1 |
aaaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagt |
100 |
Q |
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| T |
25619409 |
aaaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagt |
25619310 |
T |
|
| Q |
101 |
ttaacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctac-tatgaaaacataata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25619309 |
ttaacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataata |
25619210 |
T |
|
| Q |
200 |
aagtttatgatttggattatatgctgttattttgcttcttttcacttttgtttgcctaaa--aacatattctccatttctaaatgatatttaatattcta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |
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| T |
25619209 |
aagtttatgatttggattatatgctgttattttgcttcttttcacttttgtttgcctaaaataacatattctccatttctaaataatatttaatatacta |
25619110 |
T |
|
| Q |
298 |
ataggtgtttgtgttc |
313 |
Q |
| |
|
||||||||||||||| |
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| T |
25619109 |
ttaggtgtttgtgttc |
25619094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 25632982 - 25632762
Alignment:
| Q |
21 |
aatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagtttaa-cacagaaatgagcga |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| || | ||| | || |
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| T |
25632982 |
aatcaattttagcacacaattgtcgtcagatttgatcaaagtatttgtttaaatcattttctatatgcatcatcttaagtttactcaaaaaaaaaaaaga |
25632883 |
T |
|
| Q |
120 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctac-tatgaaaacataataaagtttatgatttggatta |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||| |||||||| | ||||||| |
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| T |
25632882 |
gggaataaatttactcgatttaagaaccgatgactatttgttggcttgtgactagataggtctacttatgaaaacataaataagtttatcaggtggatta |
25632783 |
T |
|
| Q |
219 |
tatgctgttattttgcttctt |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25632782 |
tatgctgttattttgcttctt |
25632762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 25643077 - 25642937
Alignment:
| Q |
120 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctac-tatgaaaacataataaagtttatgatttggatta |
218 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||| | |||| ||||| | |||||||| | ||||||| |
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| T |
25643077 |
ataaataaatttacacgatttaagaaccgatgcctatcagttggcttggaactagataggtctacttgtgaacacatatttaagtttatcaggtggatta |
25642978 |
T |
|
| Q |
219 |
tatgctgttattttgcttcttttcacttttgtttgcctaaaa |
260 |
Q |
| |
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||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
25642977 |
tat-ctgttattttgcttcttttcacttatatttgcctaaaa |
25642937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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