View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14026_low_1 (Length: 574)
Name: NF14026_low_1
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14026_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Complemental strand, 45390556 - 45390039
Alignment:
| Q |
15 |
actcatcctaagtggatttatgcccttccaatgtcatcagtcatcacttgcttcatattatatcctattatttgtaacacatactcaagaaaatacttta |
114 |
Q |
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| T |
45390556 |
actcatcctaagtggatttatgcccttccaatgtcatca-------cttgcttgatattatatcctattatttgtaacacatactcaagaaaatacttta |
45390464 |
T |
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| Q |
115 |
tattagtagcataagatcactttgtaattaaaattttgttgtcattaaaacaataagcgaccacctacgtctgtttttaaagacaggacctatacaaaca |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390463 |
tattagta------------------attaaaattttgttgtcattaaaacaataagcgaccacctacgtctgtttttaaagacaggacctatacaaaca |
45390382 |
T |
|
| Q |
215 |
tcttttgtcattttttacatgtattaaggaaaatattgtaagtgttcttttcgtgtatagatgttactaaaatacagtactcttttatgtatagatgagc |
314 |
Q |
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| T |
45390381 |
tcttttgtcattttttacatgtattaaggaaaatattttaagtgttctttttgtgtatagatgttactaaaatacagtactcttttatgtatagatgagc |
45390282 |
T |
|
| Q |
315 |
tcaatttaactcgatgagttacaacctgtgaacattcacctataatttgtttgagaggagtaaaacattcaccttattagtccctatttacggttccaaa |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390281 |
tcaatttaacttgatgagttacaacctgtgaacattcacctataatttgtttgagaggagtaaaacattcaccttattagtccctatttacggttccaaa |
45390182 |
T |
|
| Q |
415 |
cgacactccttgaacctgaagagggtttataatattacatttcgtataattaatcagccagacaacagaaaatgacatcaagatggaaaaatgacattta |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390181 |
cgacactccttgaacctgaagagggtttataatattacatttcatataattaatcagccagacaacagaaaatgacatcaagatggaaaaatgacattta |
45390082 |
T |
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| Q |
515 |
agatgaatttatttactgtcactctgggctgttgataatgagt |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45390081 |
agatgaatttatttactgtcactctgggctgttgataaagagt |
45390039 |
T |
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