View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14026_low_2 (Length: 424)
Name: NF14026_low_2
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14026_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 205 - 407
Target Start/End: Original strand, 37022933 - 37023135
Alignment:
| Q |
205 |
aacatttttagagggagaaagcatcaccggaccggagaaacccagaatcaaaaatcaaatcttttaaggatggagaaaatgggtgggagtgggaagagat |
304 |
Q |
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| T |
37022933 |
aacatttttagagggaggaagcatcaccggacaggagaaacccagaatcaaaaatcaaatcttttaaggatggagaaaatgggtgggagtgggaagagat |
37023032 |
T |
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| Q |
305 |
ttggggtgttgttatgtgcagatgattcagaatatgtgaagaaaatgtacggagggtattttggggtatttgtgagaatgttggaggaagaaggtgaaag |
404 |
Q |
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| T |
37023033 |
ttggggtgttgttatgtgcagatgattcagaatatgtgaagaaaatgtacggagggtattttggggtatttgtgagaatgttggaggaagaaggtgaaag |
37023132 |
T |
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| Q |
405 |
ctg |
407 |
Q |
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||| |
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| T |
37023133 |
ctg |
37023135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 37022736 - 37022879
Alignment:
| Q |
1 |
ggtcactttgacgtggaattagaccaaggacaacgttgtaaataacacaacaaatcatgccctttctcaaaaaaccaccctttaaaacaacaacgttgtc |
100 |
Q |
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| T |
37022736 |
ggtcactttgacgtggaattagaccaaggacaacgttgtaaataacacaacaaatcatgccctttctcaaaaaaccaccctttaaaacaacaacgttgtc |
37022835 |
T |
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| Q |
101 |
atcctcattctcaatctcaaaactaagtatccaaaaacaattcc |
144 |
Q |
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| T |
37022836 |
atcctcattctcaatctcaaaactaagtatccaaaaacaattcc |
37022879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 35905106 - 35905008
Alignment:
| Q |
298 |
aagagatttggggtgttgttatgtgcagatgattcagaatatgtgaagaaaatgtacggagggtattttggggtatttgtgagaatgttggaggaagaa |
396 |
Q |
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| T |
35905106 |
aagagatttggtgtgttgttatgtgcagaggattcagagtatgtgataaagatgcatggagggtattctggtgtattcttgaaaatgttggaggaagaa |
35905008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 43725250 - 43725310
Alignment:
| Q |
311 |
tgttgttatgtgcagatgattcagaatatgtgaagaaaatgtacggagggtattttggggt |
371 |
Q |
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| T |
43725250 |
tgttgttgtgtgcagaggattcagagcatgtgataaagatgtatggagggtattttggggt |
43725310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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