View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14026_low_3 (Length: 368)
Name: NF14026_low_3
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14026_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 41485783 - 41486149
Alignment:
| Q |
1 |
attctaacgattgccttgatatttgcttggatgtgctttattacacaaggaaattggcagtagcagtccataccatgcaaatatcaaagatggaattacg |
100 |
Q |
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| T |
41485783 |
attctaacgattgccttgatatt-gcttggatgtgctttattacacaaggaaattagcagtagcagtccataccatgcaaatataaaagatggaattacg |
41485881 |
T |
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| Q |
101 |
agtaaatcccgtagttgtaagcaatttggcattgccaatgatgcttcggaccatcacttttttcacaaaacctcacatatgaagcaggcaacnnnnnnnn |
200 |
Q |
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| T |
41485882 |
agtaaatcccgtagttgtaagcaatttggtattgccaatgatgcttcgggccatcacttttttcacaaaacctcacatatgaagcaggcaacttttattt |
41485981 |
T |
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| Q |
201 |
nnnnnnnnngatacctttacataaagtctttttctgttcttactttaattatacgggtttataatgaatttatttcctgaacagcatcctgaaaattgta |
300 |
Q |
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| T |
41485982 |
tttatttttgatacctttacataaagtctttttctgttcttactttaattatacgggtttataatgaatttatttcctgaacagcatcctgaaaattgta |
41486081 |
T |
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| Q |
301 |
ctgaagaaatcccaaaacaactgaaaattttgaacaaatatatgccgagtgagtcagttttatgtcct |
368 |
Q |
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| T |
41486082 |
ctgaagaaatcccaaaacaactgaaaattttgaaggaatatatgccgagtgagtcagttttatgtcct |
41486149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 52472612 - 52472715
Alignment:
| Q |
34 |
tgctttattacacaaggaaattggcagtagcagtccataccatgcaaatatcaaagatggaattacgagtaaatcccgtagttgtaagcaatttggcatt |
133 |
Q |
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| T |
52472612 |
tgctctattacagaaggaagctggcggtggcagttcttaccatgcaaatatcaaagatgaaattctgataaaattccgaagttttaagcaatttgatatt |
52472711 |
T |
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| Q |
134 |
gcca |
137 |
Q |
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|||| |
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| T |
52472712 |
gcca |
52472715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 1004206 - 1004264
Alignment:
| Q |
34 |
tgctttattacacaaggaaattggcagtagcagtccataccatgcaaatatcaaagatg |
92 |
Q |
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| T |
1004206 |
tgctttattattgaaggaaaccggcagtagcagttcataccatgccaatatcaaagatg |
1004264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 1004318 - 1004375
Alignment:
| Q |
113 |
agttgtaagcaatttggcattgccaatgatgcttcggaccatcacttttttcacaaaa |
170 |
Q |
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| T |
1004318 |
agttttaagcaatttgactttgttaatgatgcttcggaccatcactttattcataaaa |
1004375 |
T |
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