View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14026_low_4 (Length: 362)

Name: NF14026_low_4
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14026_low_4
NF14026_low_4
[»] chr6 (8 HSPs)
chr6 (4-362)||(27176030-27176394)
chr6 (1-110)||(7693385-7693497)
chr6 (1-110)||(30622094-30622206)
chr6 (2-110)||(19788965-19789076)
chr6 (1-71)||(28647363-28647436)
chr6 (1-102)||(26860512-26860616)
chr6 (1-71)||(23633253-23633324)
chr6 (23-71)||(3800689-3800737)
[»] chr3 (22 HSPs)
chr3 (1-110)||(22153934-22154046)
chr3 (23-110)||(35425561-35425648)
chr3 (1-102)||(11233928-11234028)
chr3 (4-110)||(2812354-2812463)
chr3 (23-110)||(18713698-18713785)
chr3 (20-109)||(12094280-12094369)
chr3 (1-69)||(28300356-28300427)
chr3 (4-88)||(44334712-44334799)
chr3 (1-109)||(47509037-47509148)
chr3 (1-77)||(51032548-51032625)
chr3 (4-53)||(884611-884662)
chr3 (23-102)||(23920392-23920471)
chr3 (23-70)||(24748694-24748741)
chr3 (1-102)||(2009724-2009828)
chr3 (2-83)||(34021379-34021463)
chr3 (2-83)||(53102818-53102902)
chr3 (1-37)||(31017358-31017395)
chr3 (1-85)||(31169474-31169561)
chr3 (4-72)||(38692253-38692322)
chr3 (1-53)||(12044700-12044755)
chr3 (1-88)||(39932213-39932303)
chr3 (23-71)||(44972828-44972876)
[»] chr4 (17 HSPs)
chr4 (1-113)||(17363300-17363415)
chr4 (1-77)||(10096664-10096743)
chr4 (4-76)||(46081859-46081934)
chr4 (1-102)||(44133603-44133705)
chr4 (1-70)||(46912728-46912800)
chr4 (4-72)||(31147304-31147375)
chr4 (5-83)||(4514181-4514262)
chr4 (23-110)||(11012220-11012307)
chr4 (1-110)||(41154099-41154210)
chr4 (1-53)||(8681011-8681066)
chr4 (1-53)||(36110204-36110259)
chr4 (23-112)||(42516729-42516818)
chr4 (10-102)||(45274342-45274437)
chr4 (1-88)||(1688339-1688429)
chr4 (1-52)||(1728036-1728088)
chr4 (1-113)||(34114003-34114118)
chr4 (23-91)||(40335872-40335940)
[»] chr7 (13 HSPs)
chr7 (1-112)||(30391218-30391330)
chr7 (27-110)||(49089053-49089136)
chr7 (1-110)||(17500767-17500879)
chr7 (1-110)||(17552335-17552447)
chr7 (1-111)||(31009528-31009641)
chr7 (1-83)||(26041380-26041465)
chr7 (26-77)||(47644807-47644858)
chr7 (1-102)||(44196110-44196214)
chr7 (1-37)||(6822497-6822534)
chr7 (1-53)||(41910131-41910186)
chr7 (1-53)||(47945053-47945108)
chr7 (1-53)||(47950483-47950538)
chr7 (1-72)||(31436489-31436561)
[»] chr5 (14 HSPs)
chr5 (1-72)||(27340939-27341013)
chr5 (23-110)||(3155097-3155184)
chr5 (1-110)||(33743222-33743334)
chr5 (23-110)||(18638730-18638817)
chr5 (4-72)||(21062855-21062926)
chr5 (4-110)||(34952294-34952404)
chr5 (4-111)||(3722964-3723074)
chr5 (20-110)||(30301302-30301392)
chr5 (23-109)||(39840593-39840679)
chr5 (4-88)||(20125462-20125550)
chr5 (1-70)||(25255322-25255394)
chr5 (1-70)||(25319112-25319184)
chr5 (1-110)||(31024894-31025006)
chr5 (1-53)||(14126486-14126539)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-110)||(155976-156088)
[»] chr1 (21 HSPs)
chr1 (1-110)||(8464402-8464514)
chr1 (1-110)||(30530288-30530400)
chr1 (1-102)||(44950318-44950422)
chr1 (4-88)||(33422130-33422217)
chr1 (4-88)||(44112527-44112614)
chr1 (4-88)||(44641814-44641901)
chr1 (1-114)||(4154651-4154768)
chr1 (4-71)||(31184354-31184424)
chr1 (23-111)||(34002208-34002296)
chr1 (1-76)||(38233343-38233421)
chr1 (4-102)||(40139188-40139287)
chr1 (4-110)||(41558066-41558175)
chr1 (4-77)||(52369033-52369109)
chr1 (4-110)||(52417604-52417713)
chr1 (20-110)||(50884659-50884749)
chr1 (4-88)||(29632507-29632592)
chr1 (1-53)||(29638785-29638840)
chr1 (20-69)||(45470769-45470818)
chr1 (1-53)||(48962056-48962111)
chr1 (1-72)||(5959458-5959532)
chr1 (1-37)||(18541017-18541052)
[»] chr8 (18 HSPs)
chr8 (4-83)||(8074641-8074722)
chr8 (45-110)||(11789888-11789953)
chr8 (4-92)||(41304889-41304980)
chr8 (23-110)||(34996249-34996336)
chr8 (1-53)||(18550049-18550104)
chr8 (23-102)||(40465047-40465126)
chr8 (23-77)||(324002-324056)
chr8 (4-77)||(5642312-5642388)
chr8 (4-77)||(5644253-5644329)
chr8 (23-77)||(45081162-45081216)
chr8 (1-53)||(11180378-11180433)
chr8 (23-72)||(20052928-20052977)
chr8 (1-53)||(20995004-20995059)
chr8 (1-53)||(25430716-25430771)
chr8 (1-53)||(27300416-27300471)
chr8 (1-53)||(34838216-34838271)
chr8 (1-76)||(9985601-9985679)
chr8 (1-88)||(29910123-29910213)
[»] chr2 (8 HSPs)
chr2 (20-110)||(2308213-2308303)
chr2 (4-88)||(546296-546383)
chr2 (1-45)||(11980721-11980766)
chr2 (25-110)||(42665701-42665786)
chr2 (1-71)||(25994171-25994244)
chr2 (4-88)||(6666093-6666180)
chr2 (1-53)||(38027561-38027616)
chr2 (1-52)||(11126534-11126588)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-114)||(4385-4500)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 27176030 - 27176394
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    ||||||||||||||| ||||   |||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  27176030 ttattctctctcttcatttttctctctttattattttggaccaataagaagaaagcaaatgaaagttgtcattaaagatgtcacaaattattttacaaat 27176129  T
Q  101 atgactactcataagaaagacaaaaatataaattttttattgaatttgaaaacacaattttctaacctctataaagttgaataaatatttatccgcaaag 200  Q
    || |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27176130 atcactactcacaagaaagacaaaaatttaaattttttattgaatttgaaaaaacaattttctaacctctataaagttgaataaatatttatccgcaaag 27176229  T
Q  201 gtgtaacacaaccgataatattaacattattagatcgaatatcttctgtggtgtttttcggaagcttccacnnnnnnnnngtt---gtcttaactctccg 297  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||          ||   || |||||||||||    
T  27176230 gtgttacacaaccgacaatatcaacattattagatcgaatatcttttgtggtgtttttcggaagcttccacttttttttttttttggtgttaactctccg 27176329  T
Q  298 gttttcaaggggaagatgccctggtaatttggagttccatcaatagctaagtaaaatctgacaaa 362  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27176330 gttttcaagggaaagatgccctggtaatttggagttccatcaatagctaagtaaaatctgacaaa 27176394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 7693385 - 7693497
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||||||||   ||||| ||| ||||||| |||||||||||| | |||| ||| ||||||| |||| |||| ||||| ||| ||||    
T  7693385 ttcttattctctctcttcctttttctctctccattgttttggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtaca 7693484  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  7693485 tatatcactactc 7693497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30622094 - 30622206
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||| |||||   ||||| ||| ||||||| ||||||||||||   |||||||||||||||| |||| |||| ||||| ||| ||||    
T  30622094 ttcttattctctctctttctttttctctctccattgttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtaca 30622193  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  30622194 tatatcactactc 30622206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 19789076 - 19788965
Alignment:
Q  2 tcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaa 98  Q
    ||||||||||||||||||||||   |||| |||||||||||| |||| ||||||| | |||| | ||||||||| |||| |||| ||||| ||| ||||     
T  19789076 tcttattctctctcttcctttttctctctttattattttggaccaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacat 19788977  T
Q  99 atatgactactc 110  Q
    |||| |||||||    
T  19788976 atatcactactc 19788965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28647436 - 28647363
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    |||||||||||||||||||||||   |||| |||||||||||| |||| |||||||  ||||| ||||||||||    
T  28647436 ttcttattctctctcttcctttttctctctgtattattttggaccaatgagaagagaacaaattaaagttgtca 28647363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26860616 - 26860512
Alignment:
Q  1 ttcttattctctctcttccttttc---tctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||| |||||||||||||||||   |||||||| ||||||| |||||  ||||| | |||| |||||||||||||||| ||| | | || ||| ||||    
T  26860616 ttcttaatctctctcttccttttcctctctctattgttttggaccaatagaaagagagtaaataaaagttgtcattaaagttgttagatatggttgtaca 26860517  T
Q  98 aatat 102  Q
    |||||    
T  26860516 aatat 26860512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23633324 - 23633253
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||| | || || | |||| ||||||||||    
T  23633324 ttcttattctctctcttcctttttctctctattgttttggaccaatgaaaaaagagaaaataaaagttgtca 23633253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 3800689 - 3800737
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    |||||||||| ||||||| |||| ||||||| | |||||||||||||||    
T  3800689 tctctctattgttttggaccaatgagaagagagaaaatgaaagttgtca 3800737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22153934 - 22154046
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||| |||||||||   |||||| |||||||||| |||| | ||||| ||||||||||||||||||||||| |||  ||||| ||| ||||    
T  22153934 ttcttattctctcgcttcctttttctctctctgttattttggaccaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtaca 22154033  T
Q  98 aatatgactactc 110  Q
    ||||| |||||||    
T  22154034 aatatcactactc 22154046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 35425648 - 35425561
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||  |||||  || |||| |||| |||||||    
T  35425648 tctctctattgttttggatcaatgagaagagagcaaatgaaagttgtcatcaaagatgtaccaaatgattatacatatatcactactc 35425561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 11234028 - 11233928
Alignment:
Q  1 ttcttattctctctcttccttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||| ||||||| | |||| ||||||||||| |||| |||  ||||| ||| |||| ||    
T  11234028 ttcttattcactctcttc-ttttctctctattgttttggatcaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatggttgtacatat 11233930  T
Q  101 at 102  Q
    ||    
T  11233929 at 11233928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 2812354 - 2812463
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    ||||||||||||||| ||||   ||||| ||| ||||||| |||||||||||  | |||||||| || ||||||||| |||| ||||| ||| |||| ||    
T  2812354 ttattctctctcttcttttttctctctccattgttttggaccaataagaagaaagaaaatgaaaattatcattaaagttgtctcaaatagttatacatat 2812453  T
Q  101 atgactactc 110  Q
    || |||||||    
T  2812454 attactactc 2812463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 18713698 - 18713785
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||||||| |||| ||||||| |  |||||||||||||||||||  |||  ||||| ||| |||| |||| |||||||    
T  18713698 tctctctattattttggaccaatgagaagagagagaatgaaagttgtcattaaaattgttccaaatggttgtacatatatcactactc 18713785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 12094369 - 12094280
Alignment:
Q  20 ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactact 109  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||  |||||| |||| ||||| | |  ||| ||||||||| ||||||    
T  12094369 ttttctctctattgttttagaccaataagaagagagcaaatgaaatgtgtcatcaaagttgtcatagacggttgtacaaatatcactact 12094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28300356 - 28300427
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgt 69  Q
    |||||||||||||||||| ||||   ||||||||| ||||||| ||||||||||||  ||||| ||||||||    
T  28300356 ttcttattctctctcttcatttttctctctctattgttttggaccaataagaagagaacaaattaaagttgt 28300427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 44334799 - 44334712
Alignment:
Q  4 ttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||   |||||||||| ||||||| |||| ||||||| | |||| ||| ||||||  |||| ||||||||||    
T  44334799 ttattctctctcttcctttttctctctctattgttttggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcacaaat 44334712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47509148 - 47509037
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||| ||||   |||||||||| ||||||| ||||||||| ||  ||||| ||| ||||||| |||| |||  ||||| ||| ||||    
T  47509148 ttcttattctctctctttctttctctctctctattgttttggaccaataagaaaagaacaaataaaaattgtcatcaaagttgtatcaaatggttgtaca 47509049  T
Q  98 aatatgactact 109  Q
     |||| ||||||    
T  47509048 tatatcactact 47509037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51032625 - 51032548
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    ||||||||||||||||||| |||||||||||||||||| || |||| | ||||  | |||| ||||||||||| ||||    
T  51032625 ttcttattctctctcttcctttttctctctattatttttgaccaatcaaaagatagaaaattaaagttgtcatgaaag 51032548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 884611 - 884662
Alignment:
Q  4 ttattctctctcttcctttt--ctctctattattttggatcaataagaagag 53  Q
    |||||||| |||||||||||  |||||||||||||| |||||||||||||||    
T  884611 ttattctccctcttccttttttctctctattatttttgatcaataagaagag 884662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 23920392 - 23920471
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatat 102  Q
    |||||||||| ||||||| ||||| |||||| | |||| ||| |||||||||||| ||| ||| || ||| |||||||||    
T  23920392 tctctctattgttttggaccaataggaagagagtaaataaaaattgtcattaaagttgttacatatggttgtacaaatat 23920471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 24748694 - 24748741
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtc 70  Q
    |||||||||||||||||| |||| ||||||| | ||||||||||||||    
T  24748694 tctctctattattttggaccaatgagaagagagaaaatgaaagttgtc 24748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2009724 - 2009828
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||| ||||   ||||| |||||||| || |||||||||||| | |||  || |||||||  |||| ||||| |||||| | ||||    
T  2009724 ttcttattctctctcttcatttttctctctccattatttttgaccaataagaagagagaaaagcaaggttgtcaccaaagttgtcataaattgatgtaca 2009823  T
Q  98 aatat 102  Q
    |||||    
T  2009824 aatat 2009828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 34021463 - 34021379
Alignment:
Q  2 tcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtca 83  Q
    |||||| |||||||||||||||   ||||||||| |||| || |||||||||||| | |||  |||||||||| ||||| |||||    
T  34021463 tcttatcctctctcttcctttttctctctctattgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtca 34021379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 53102902 - 53102818
Alignment:
Q  2 tcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtca 83  Q
    ||||||||||||||||||||||   ||||| ||| |||| ||||||||||||||| | |||  || ||||||| ||||| |||||    
T  53102902 tcttattctctctcttcctttttttctctccattgtttttgatcaataagaagagagaaaaacaaggttgtcactaaagttgtca 53102818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31017395 - 31017358
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattatttt 37  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  31017395 ttcttattctctctcttcctttttctctctattatttt 31017358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31169561 - 31169474
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcaca 85  Q
    |||||||||||||||||| |||   ||||| |||| |||||| ||||| |||| || | |||||||||||||||| |||  |||||||    
T  31169561 ttcttattctctctcttcttttctctctctatattgttttgggtcaatgagaatagagaaaatgaaagttgtcatcaaaattgtcaca 31169474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 38692322 - 38692253
Alignment:
Q  4 ttattctctctcttcctttt-ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    ||||||||||||||| |||| ||||||||| |||| || |||||||||||  | ||| ||||||||||||    
T  38692322 ttattctctctcttcgtttttctctctattgtttttgaccaataagaagatagaaaaagaaagttgtcat 38692253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12044755 - 12044700
Alignment:
Q  1 ttcttattctctctcttccttt-tctctct--attattttggatcaataagaagag 53  Q
    |||||||||||||||||||||| |||||||  ||| |||| |||||||||||||||    
T  12044755 ttcttattctctctcttcctttctctctcttcattgtttttgatcaataagaagag 12044700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39932213 - 39932303
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    ||||||||||||||||||||||   |||||||||| ||||| | |||| |||| || | |||| ||||||||||  |||| ||||| ||||    
T  39932213 ttcttattctctctcttcctttttctctctctattgttttgaaccaatgagaaaagagaaaataaaagttgtcaacaaagttgtcaaaaat 39932303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 44972828 - 44972876
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    |||||||||| ||||||| ||||||||| || | |||||||||||||||    
T  44972828 tctctctattgttttggaccaataagaaaagagaaaatgaaagttgtca 44972876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17363300 - 17363415
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||| ||||   ||||||||| ||||||| |||| | ||||| |||||||||||||||||| |||| |||   |||| ||||||||    
T  17363300 ttcttattctctctcttcttttttctctctctattgttttggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtataaaatggttttaca 17363399  T
Q  98 aatatgactactcata 113  Q
    ||||| |||| |||||    
T  17363400 aatatcactattcata 17363415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10096743 - 10096664
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    |||||||||||||||||| ||||   ||||||||| ||||||| |||| ||||||| |||||||||||||||||| ||||    
T  10096743 ttcttattctctctcttcatttttctctctctattgttttggaccaatgagaagagagcaaatgaaagttgtcatcaaag 10096664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 46081859 - 46081934
Alignment:
Q  4 ttattctctctcttcc-ttttct--ctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaa 76  Q
    ||||||||||| |||| ||||||  ||||||||||||||| |||| ||||||| |||||||||||||||| |||||    
T  46081859 ttattctctcttttcccttttctatctctattattttggaccaatgagaagagagcaaatgaaagttgtcgttaaa 46081934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 44133603 - 44133705
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaa 99  Q
    |||||| |||||||||||| |||||| |||||| ||||||| ||||| |||||| | |||| |||||| ||||||||| ||| | | || ||| ||||||    
T  44133603 ttcttaatctctctcttcctttttctttctattgttttggaccaataggaagagagtaaataaaagttatcattaaagttgttagatatagttgtacaaa 44133702  T
Q  100 tat 102  Q
    |||    
T  44133703 tat 44133705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46912800 - 46912728
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtc 70  Q
    |||||||||||||| ||||||||   ||||| ||| ||||||| |||||||||||| | ||||||||||||||    
T  46912800 ttcttattctctcttttcctttttctctctccattgttttggaccaataagaagagagaaaatgaaagttgtc 46912728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 31147304 - 31147375
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    ||||||||||||||||||||   ||||| ||| ||||||| |||||||||||| | |||| |||||||||||    
T  31147304 ttattctctctcttcctttttctctctccattgttttggaccaataagaagagagaaaataaaagttgtcat 31147375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 4514262 - 4514181
Alignment:
Q  5 tattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtca 83  Q
    ||||||||||||||||||   ||| |||||| ||||||| |||| ||||||| | |||||||| ||||||| |||| |||||    
T  4514262 tattctctctcttcctttttctctttctattgttttggaccaatgagaagagagaaaatgaaaattgtcatcaaagttgtca 4514181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 11012220 - 11012307
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||| ||| ||| ||||||||| || | |||||||||||||||| |||| ||||||| ||  || |||| |||| |||||||    
T  11012220 tctctctattgtttcggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatcactactc 11012307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41154099 - 41154210
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||||||||   |||||||||| ||||||| |||| || | || || ||||||| ||||||| |||| |||  ||||| ||| ||||    
T  41154099 ttcttattctctctcttcctttttctctctctatt-ttttggaccaatgaggaaagagccaatgaaaattgtcatcaaagttgtatcaaatggttgtaca 41154197  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  41154198 tatatcactactc 41154210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8681011 - 8681066
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||| ||| |||| |||||||||||||||    
T  8681011 ttcttattctctctcttcctttttctctctccattgtttttgatcaataagaagag 8681066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36110204 - 36110259
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagag 53  Q
    |||||||||||||||||||| ||   |||||||||||||| || ||||||||||||    
T  36110204 ttcttattctctctcttcctctttctctctctattatttttgaccaataagaagag 36110259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 42516729 - 42516818
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactcat 112  Q
    |||||||||| | ||||| |||| |||||||   |||||||||||||||| |||  |||||||||| ||| |||| |||| ||| |||||    
T  42516729 tctctctattgtcttggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatcactgctcat 42516818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 45274342 - 45274437
Alignment:
Q  10 tctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatat 102  Q
    ||||||||||||||   |||| |||||||||||| |||| | ||||| | |||||| ||||||||| |||| |||| ||||| ||| |||| ||||    
T  45274342 tctctcttcctttttctctctttattattttggaccaatgaaaagagagaaaatgagagttgtcatcaaagttgtcccaaatagttgtacatatat 45274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1688429 - 1688339
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    ||||||||||||||||| ||||   ||||||||||  |||||| |||| ||||||| | |||| |||||||| | ||||  ||||||||||    
T  1688429 ttcttattctctctctttctttttctctctctattggtttggaccaatgagaagagagaaaataaaagttgtgaataaaattgtcacaaat 1688339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1728088 - 1728036
Alignment:
Q  1 ttcttattctctctcttccttt-tctctctattattttggatcaataagaaga 52  Q
    ||||||||||||||||| |||| |||||||||| |||| || |||||||||||    
T  1728088 ttcttattctctctctttctttctctctctattgtttttgaccaataagaaga 1728036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34114118 - 34114003
Alignment:
Q  1 ttcttattctctctcttcctttt-ctctc--tattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||| ||||||||||||| |||| |||||  |||| ||||||| |||||||||||| | |||||||||||  ||| |||| |||  |||||  || ||||    
T  34114118 ttctcattctctctcttcatttttctctccatattgttttggaccaataagaagagagaaaatgaaagttaccatcaaagttgttccaaatgattgtaca 34114019  T
Q  98 aatatgactactcata 113  Q
     |||| ||||||||||    
T  34114018 tatatcactactcata 34114003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 40335872 - 40335940
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgt 91  Q
    |||||||||| |||| || |||| || |||| | |||||||||||||||| |||| |||| ||||||||    
T  40335872 tctctctattgttttagaccaatgaggagagagaaaatgaaagttgtcatcaaagttgtctcaaattgt 40335940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30391218 - 30391330
Alignment:
Q  1 ttcttattctctctcttcctttt-ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaa 99  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||| | |||| ||||||||||| |||| |||  |||||  || |||| |    
T  30391218 ttcttattctctctcttcctttttctctctattgttttggaccaatgagaagagagtaaataaaagttgtcatcaaagttgtaccaaatgattgtacata 30391317  T
Q  100 tatgactactcat 112  Q
    ||| |||||||||    
T  30391318 tatcactactcat 30391330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 49089136 - 49089053
Alignment:
Q  27 tctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||| |||| ||||||| | |||||||||||||||| |||| ||||| |||||||| |||| |||| |||||||    
T  49089136 tctattattttggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcactactc 49089053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17500767 - 17500879
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||| ||||   ||||| ||| ||||||| |||||||||||| | ||||||||||| |||| |||| |||| ||||| ||| ||||    
T  17500767 ttcttattctctctcttcatttttctctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtaca 17500866  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  17500867 tatatcactactc 17500879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17552447 - 17552335
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||| ||||   ||||| ||| ||||||| |||||||||||| | ||||||||||| |||| |||| |||| ||||| ||| ||||    
T  17552447 ttcttattctctctcttcatttttctctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtaca 17552348  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  17552347 tatatcactactc 17552335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31009641 - 31009528
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||| |||||||||||||||   |||||||||| ||||||| ||||| |||||| | |||| |||||||||| ||||| ||| | | || ||| ||||    
T  31009641 ttcttaatctctctcttcctttttctctctctattgttttggaccaataggaagagagtaaataaaagttgtcactaaagttgttagatatggttgtaca 31009542  T
Q  98 aatatgactactca 111  Q
    ||||| || |||||    
T  31009541 aatatcacaactca 31009528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26041380 - 26041465
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtca 83  Q
    |||||||||||||||||||||||   ||||| ||| |||| || |||||||||||| | |||  |||||||||| ||||| |||||    
T  26041380 ttcttattctctctcttcctttttttctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtca 26041465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 47644807 - 47644858
Alignment:
Q  26 ctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    ||||||| ||||||| |||| ||||||| |||||||||||||||||| ||||    
T  47644807 ctctattgttttggaccaatgagaagagagcaaatgaaagttgtcatcaaag 47644858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44196214 - 44196110
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||| |||||||||||||||   |||||||||| ||||||| |||||  ||||| | |||| ||||||||||| |||| ||| | | || ||| ||||    
T  44196214 ttcttaatctctctcttcctttctctctctctattgttttggaccaatagaaagagcgtaaataaaagttgtcatcaaagttgttagatatagttgtaca 44196115  T
Q  98 aatat 102  Q
    |||||    
T  44196114 aatat 44196110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6822534 - 6822497
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattatttt 37  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  6822534 ttcttattctctctcttcctttttctctctattatttt 6822497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41910186 - 41910131
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  41910186 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 41910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47945053 - 47945108
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagag 53  Q
    |||||||||||||||||||| ||   |||||||||||||| || ||||||||||||    
T  47945053 ttcttattctctctcttcctctttctctctctattatttttgaccaataagaagag 47945108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47950483 - 47950538
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagag 53  Q
    |||||||||||||||||||| ||   |||||||||||||| || ||||||||||||    
T  47950483 ttcttattctctctcttcctctttctctctctattatttttgaccaataagaagag 47950538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31436489 - 31436561
Alignment:
Q  1 ttcttattctctctcttcctttt-ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    |||||||||| ||| |||||||| ||||||||| |||| || |||| |||||||   ||||||||||||||||    
T  31436489 ttcttattctatctgttcctttttctctctatttttttagaccaatgagaagagataaaatgaaagttgtcat 31436561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27340939 - 27341013
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    |||||||||||||||||||||||   ||||||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  27340939 ttcttattctctctcttcctttttctctctctattgttttggaccaataaaaagagagcaaatgaaagttgtcat 27341013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 3155097 - 3155184
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| | ||  || ||||||||| |||||||    
T  3155097 tctctctattattttggaccaataagaatagagaaaatgaaagttgtcattaaagttgtcatatatgattgtacaaatatcactactc 3155184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33743334 - 33743222
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||| |||||   ||||||||| |||||||||||| ||||||| |||||| ||||||||||| |||| |||  |||||  || ||||    
T  33743334 ttcttattctctctctttctttttctctctctattgttttggatcaatgagaagagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtaca 33743235  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  33743234 tatatcactactc 33743222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 18638817 - 18638730
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||||||| ||||||||| || | |||| ||||||||||| |||| |||| ||||| ||| |||| |||| |||||||    
T  18638817 tctctctattattttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactc 18638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 21062855 - 21062926
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    ||||||||||||||||||||   ||||||||| ||||||  ||||||||| || ||||||||||||||||||    
T  21062855 ttattctctctcttcctttttctctctctattgttttgggccaataagaaaagagcaaatgaaagttgtcat 21062926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 34952404 - 34952294
Alignment:
Q  4 ttattctctctcttcctttt----ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaa 99  Q
    ||||||||||||||||||||    ||||||||| ||||||| |||||||||||| | |||| ||||||||||| |||| | || |||||  || |||| |    
T  34952404 ttattctctctcttccttttttctctctctattgttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatcccaaataattgtacata 34952305  T
Q  100 tatgactactc 110  Q
    ||| |||||||    
T  34952304 tatcactactc 34952294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 3723074 - 3722964
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    ||||||||||||||| ||||   ||||| ||| ||||||| |||||| ||||| | |||||||||||||||| |||| |||| ||||| ||| |||| ||    
T  3723074 ttattctctctcttcatttttctctctccattgttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatat 3722975  T
Q  101 atgactactca 111  Q
    || | ||||||    
T  3722974 atcattactca 3722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 30301302 - 30301392
Alignment:
Q  20 ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    ||||||||||||| |||||||  ||| ||||||| | |||||||||||||||| |||| ||| ||| || ||| |||| |||| |||||||    
T  30301302 ttttctctctattgttttggacaaatgagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatcactactc 30301392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 39840679 - 39840593
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactact 109  Q
    |||||||||| ||||||| |||| ||||||| | |||| ||||||||||| |||| | |||||||| ||| |||| |||| ||||||    
T  39840679 tctctctattgttttggaccaatgagaagagggaaaataaaagttgtcatcaaagttatcacaaatagttgtacatatatcactact 39840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 20125462 - 20125550
Alignment:
Q  4 ttattctctctcttcctttt----ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    ||||||||||||||||||||    |||||| || |||| || |||| ||||||| | |||||||||||||||| |||| |||| |||||    
T  20125462 ttattctctctcttccttttttttctctctgttgtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaat 20125550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25255322 - 25255394
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtc 70  Q
    |||||| |||||||||||||||   |||||||||| ||||||| ||||||||| || | |||| |||||||||    
T  25255322 ttcttaatctctctcttcctttttctctctctattgttttggaccaataagaatagagtaaataaaagttgtc 25255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25319112 - 25319184
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtc 70  Q
    |||||| |||||||||||||||   |||||||||| ||||||| ||||||||| || | |||| |||||||||    
T  25319112 ttcttaatctctctcttcctttttctctctctattgttttggaccaataagaatagagtaaataaaagttgtc 25319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31025006 - 31024894
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||| ||||||||||   ||||||||| ||||| | |||| |||||||   |||||||||||||| | |||| | |||| ||||| | ||||    
T  31025006 ttcttattctctttcttcctttttctctctctattgttttgaaccaatgagaagagaaaaaatgaaagttgtcgtcaaagttatcaccaattgatgtaca 31024907  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  31024906 tatatcactactc 31024894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14126486 - 14126539
Alignment:
Q  1 ttcttattctctctcttcctttt-ctctctattattttggatcaataagaagag 53  Q
    |||||||||||||| |||||||| ||||||||| |||| || ||||||||||||    
T  14126486 ttcttattctctcttttcctttttctctctattgtttttgaccaataagaagag 14126539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 155976 - 156088
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||||||||   ||||| |||| ||||||| |||| ||||||| | |||||| ||||||||| |||| |||| ||||| ||| ||||    
T  155976 ttcttattctctctcttcctttttctctctttattgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtaca 156075  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  156076 tatatcactactc 156088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8464514 - 8464402
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||||||||||||||||||   ||||| ||||||||||| |||||| ||||| | |||||||||||||||| |||| || | ||| | ||| ||||    
T  8464514 ttcttattctctctcttcctttttctctctccattattttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttggcccaagtggttgtaca 8464415  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  8464414 tatatcactactc 8464402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30530400 - 30530288
Alignment:
Q  1 ttcttattctctctcttccttttc---tctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||||| ||||||||||||||    |||| ||| ||||||| |||||||||||| | |||||||||||||||| |||| |||| ||||| ||| ||||    
T  30530400 ttcttattatctctcttcctttttctgtctccattgttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtaca 30530301  T
Q  98 aatatgactactc 110  Q
     |||| |||||||    
T  30530300 tatatcactactc 30530288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44950422 - 44950318
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    |||||| ||||||||||||||||   ||||||||| ||||||||||||| |||||| | |||| |||||||||||||||  ||| ||| || ||| ||||    
T  44950422 ttcttaatctctctcttccttttttcctctctattgttttggatcaataggaagagagtaaataaaagttgtcattaaaattgttacatatagttgtaca 44950323  T
Q  98 aatat 102  Q
    |||||    
T  44950322 aatat 44950318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 33422217 - 33422130
Alignment:
Q  4 ttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||   |||||||||| ||||||| |||| ||||||| | |||| ||||||||||  |||| ||||||||||    
T  33422217 ttattctctctcttcctttttctctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaat 33422130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 44112527 - 44112614
Alignment:
Q  4 ttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||   |||||||||| ||||||| |||| ||||||| | |||| ||||||||||  |||| ||||||||||    
T  44112527 ttattctctctcttcctttttctctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaat 44112614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 44641901 - 44641814
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    ||||||||||||||||||||   ||||||||||||||||| |||| ||||||| | |||| ||||||||||  |||| | ||||||||    
T  44641901 ttattctctctcttcctttttctctctctattattttggaccaatgagaagagagaaaataaaagttgtcaacaaagttatcacaaat 44641814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4154651 - 4154768
Alignment:
Q  1 ttcttattctctctcttcctttt----ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttac 96  Q
    |||||| ||||||||||||||||    ||||||||| ||||||| |||||||||||| | |||| |||||| ||||||||| ||| | | ||  || |||    
T  4154651 ttcttaatctctctcttccttttttctctctctattgttttggaccaataagaagagagtaaataaaagttatcattaaagttgttagatatgtttgtac 4154750  T
Q  97 aaatatgactactcataa 114  Q
    |||||| || ||||||||    
T  4154751 aaatatcacaactcataa 4154768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 31184354 - 31184424
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    |||||||||||||| |||||   ||||||||| ||||||||||||||||| || | |||||||||||||||    
T  31184354 ttattctctctctttctttttctctctctattgttttggatcaataagaaaagagaaaatgaaagttgtca 31184424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 34002296 - 34002208
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactca 111  Q
    |||||| ||| ||||||| |||||||||||| | ||||||||||||| || |||| |||| ||||| ||| |||| |||| ||||||||    
T  34002296 tctctccattgttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactca 34002208  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38233343 - 38233421
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaa 76  Q
    |||||| ||||||||||||||||   ||||||||| ||||||| ||||| |||||| | |||| |||||||||||||||    
T  38233343 ttcttaatctctctcttcctttttctctctctattgttttggaccaataggaagagagtaaataaaagttgtcattaaa 38233421  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 40139188 - 40139287
Alignment:
Q  4 ttattctctctcttccttt-tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatat 102  Q
    ||||||||||||||||||  | |||||||| |||||||  ||| ||||||| | |||||||||||||||| |||  |||||||||| ||| |||| ||||    
T  40139188 ttattctctctcttccttcctttctctattgttttggacaaatgagaagagagaaaatgaaagttgtcatcaaacttgtcacaaatagttgtacatatat 40139287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41558066 - 41558175
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    |||| |||||||||||||||   ||||||||| |||| || |||||||||||  | ||| |||||||||||  | || |||||||||| ||| |||||||    
T  41558066 ttatcctctctcttcctttttgtctctctattgtttttgaccaataagaagaaagaaaaggaaagttgtcacaatagttgtcacaaatggttgtacaaat 41558165  T
Q  101 atgactactc 110  Q
    || |||||||    
T  41558166 atcactactc 41558175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 52369109 - 52369033
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    |||||||||||||| |||||   ||||||||| ||||||| |||| |||| || |||||||||||||||||| ||||    
T  52369109 ttattctctctctttctttttctctctctattgttttggaccaatgagaatagagcaaatgaaagttgtcatcaaag 52369033  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 52417604 - 52417713
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaat 100  Q
    ||||||||||||||| ||||   ||||| ||| ||||||| |||||||||||| | ||||||||||| |||| |||| |||  ||||| ||| || | ||    
T  52417604 ttattctctctcttcttttttgtctctccattgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatat 52417703  T
Q  101 atgactactc 110  Q
    || |||||||    
T  52417704 atcactactc 52417713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 50884749 - 50884659
Alignment:
Q  20 ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    ||||||||||||| |||||||  ||| ||||||  ||||||||||||| |||| |||| |||  ||||| ||| |||| |||| |||||||    
T  50884749 ttttctctctattgttttggactaatgagaagatagcaaatgaaagttttcatcaaagttgtaccaaatggttgtacatatatcactactc 50884659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 29632507 - 29632592
Alignment:
Q  4 ttattctctctcttcctttt-ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||| | |||||||||||| || |||||| || || | ||||  ||||||||||  ||| ||||||||||    
T  29632507 ttattctctctcttcctttttcgctctattatttttgaccaataaaaatagagaaaattgaagttgtcatagaagttgtcacaaat 29632592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29638785 - 29638840
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaagag 53  Q
    |||||||||||||||||||||||   ||||||||| |||| || ||||||||||||    
T  29638785 ttcttattctctctcttcctttttccctctctattgtttttgaccaataagaagag 29638840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 45470818 - 45470769
Alignment:
Q  20 ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgt 69  Q
    ||||||||| ||| ||||||| |||||||||||| | |||||||||||||    
T  45470818 ttttctctccattgttttggaccaataagaagagagaaaatgaaagttgt 45470769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 48962056 - 48962111
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  48962056 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 48962111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5959458 - 5959532
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    |||||||||||||||||| |||   |||||| ||| |||| || |||||||||||| | |||| |||||||||||    
T  5959458 ttcttattctctctcttcgtttctctctctccattgtttttgaccaataagaagagagaaaatcaaagttgtcat 5959532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18541052 - 18541017
Alignment:
Q  1 ttcttattctctctcttccttttctctctattatttt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  18541052 ttcttattctctctcttcctttt-tctctattatttt 18541017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 8074722 - 8074641
Alignment:
Q  4 ttattctctctcttcctttt--ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtca 83  Q
    |||||||||||||| |||||  ||||||||| ||||| | |||||||||||| | |||||||||||||||| |||| |||||    
T  8074722 ttattctctctctttcttttttctctctattgttttgaaccaataagaagagagaaaatgaaagttgtcatcaaagttgtca 8074641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 11789888 - 11789953
Alignment:
Q  45 taagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||  ||||||||||||||||| |||||| |||||||| ||| ||||||||| |||||||    
T  11789888 taagaagagaacaaatgaaagttgtcatcaaagatatcacaaatagttgtacaaatatcactactc 11789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 41304980 - 41304889
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgtt 92  Q
    ||||||||||||||| ||||   ||||||||| ||||||| |||| ||||||| | |||| ||||||||||  |||| ||||||||||||||    
T  41304980 ttattctctctcttcttttttctctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaattgtt 41304889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 34996336 - 34996249
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||| ||| |||| | ||||| |||||||||||||||||| |||| |||  ||||| ||| |||| |||| |||||||    
T  34996336 tctctctattatttcggaccaatgaaaagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatcactactc 34996249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18550049 - 18550104
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| |||||||||||||||    
T  18550049 ttcttattctctctcttcctttttctctctctattgtttttgatcaataagaagag 18550104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 40465047 - 40465126
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatat 102  Q
    ||||||||||||||||   |||||| || ||  ||||||||||||||||| ||| ||||||| ||| ||| |||||||||    
T  40465047 tctctctattattttgcgccaataaaaaaagaacaaatgaaagttgtcataaaaaatgtcactaatagttgtacaaatat 40465126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 324056 - 324002
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    |||||||||| ||||||| |||||||||||| | |||| ||||||||||| ||||    
T  324056 tctctctattgttttggaccaataagaagagagtaaataaaagttgtcatcaaag 324002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 5642388 - 5642312
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    ||||||| ||||||||||||   ||||| ||| ||||||| |||||||||||| | |||| ||||||||||| ||||    
T  5642388 ttattctttctcttcctttttgtctctccattgttttggaccaataagaagagagaaaataaaagttgtcatcaaag 5642312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 5644329 - 5644253
Alignment:
Q  4 ttattctctctcttcctttt---ctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    ||||||| ||||||||||||   ||||| ||| ||||||| |||||||||||| | |||| ||||||||||| ||||    
T  5644329 ttattctttctcttcctttttgtctctccattgttttggaccaataagaagagagaaaataaaagttgtcatcaaag 5644253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 45081162 - 45081216
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaag 77  Q
    |||||||||| ||||||||||||| |||||| | |||| ||||||||||| ||||    
T  45081162 tctctctattgttttggatcaataggaagagagtaaataaaagttgtcatcaaag 45081216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11180378 - 11180433
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| ||||||| |||| |||||||    
T  11180378 ttcttattctctctcttcctttttctctctctattgttttggaccaatgagaagag 11180433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 20052928 - 20052977
Alignment:
Q  23 tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcat 72  Q
    |||||||||||||||| |||||| | ||||| | ||||||||||||||||    
T  20052928 tctctctattattttgaatcaatgaaaagagagaaaatgaaagttgtcat 20052977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20995059 - 20995004
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  20995059 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 20995004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25430716 - 25430771
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  25430716 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 25430771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27300416 - 27300471
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  27300416 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 27300471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34838271 - 34838216
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  34838271 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 34838216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9985679 - 9985601
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaa 76  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||| || | ||| | ||||||||| ||||    
T  9985679 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaaaagagaaaaggtaagttgtcactaaa 9985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29910213 - 29910123
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||| |||||||||||   |||||||||| ||||| | |||| ||||||| | |||| ||||||||||  |||| ||||| ||||    
T  29910213 ttcttattctttctcttcctttctctctctctattgttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaat 29910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 2308303 - 2308213
Alignment:
Q  20 ttttctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||||||||||||| |  |||| ||||||| | |||||||||||||||| |||| ||||| | || ||| ||||||||| |||||||    
T  2308303 ttttctctctattatttttggccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 546383 - 546296
Alignment:
Q  4 ttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||   |||||||||| ||||||| |||| ||||||| | |||| ||||||||||  |||| ||||||||||    
T  546383 ttattctctctcttcctttttctctctctattgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaat 546296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11980721 - 11980766
Alignment:
Q  1 ttcttattctctctcttcc-ttttctctctattattttggatcaat 45  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  11980721 ttcttattctctctcttcctttttctctctattatttttgatcaat 11980766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 42665786 - 42665701
Alignment:
Q  25 tctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttacaaatatgactactc 110  Q
    |||||||| ||||||| |||| | || || |||||||||||||||||| |||| |||  ||||| ||| ||||||||| |||||||    
T  42665786 tctctattgttttggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatcactactc 42665701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25994171 - 25994244
Alignment:
Q  1 ttcttattctctctcttcctttt-ctctctattat--tttggatcaataagaagagtgcaaatgaaagttgtca 71  Q
    ||||||||| ||||||| ||||| |||||| ||||  |||||| |||||||||||| | |||||||||||||||    
T  25994171 ttcttattccctctctttctttttctctctcttatgttttggaccaataagaagagagaaaatgaaagttgtca 25994244  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 6666093 - 6666180
Alignment:
Q  4 ttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaat 88  Q
    |||||||||||||||||||   ||||||| || ||||||| |||| ||||||| | |||| ||||||||||  |||  ||||||||||    
T  6666093 ttattctctctcttcctttttctctctcttttgttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaat 6666180  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38027616 - 38027561
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagag 53  Q
    ||||||||||||||||||||||   |||||||||| |||| || ||||||||||||    
T  38027616 ttcttattctctctcttcctttttctctctctattgtttttgaccaataagaagag 38027561  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11126534 - 11126588
Alignment:
Q  1 ttcttattctctctcttcctttt---ctctctattattttggatcaataagaaga 52  Q
    |||||||||||||||||||||||   ||||| ||| |||| ||||||||||||||    
T  11126534 ttcttattctctctcttcctttttccctctccattgtttttgatcaataagaaga 11126588  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4385 - 4500
Alignment:
Q  1 ttcttattctctctcttccttt---tctctctattattttggatcaataagaagagtgcaaatgaaagttgtcattaaagatgtcacaaattgttttaca 97  Q
    ||||||||||||||||||||||   |||||||||| |||| || |||| | ||||| | |||| | ||||||||| |||| |||||| ||| ||| ||||    
T  4385 ttcttattctctctcttcctttttctctctctattgtttt-gaccaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtaca 4483  T
Q  98 aatatgactactcataa 114  Q
     |||| |||| ||||||    
T  4484 tatatcactattcataa 4500  T

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