View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14026_low_7 (Length: 257)

Name: NF14026_low_7
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14026_low_7
NF14026_low_7
[»] chr3 (2 HSPs)
chr3 (1-244)||(25619393-25619636)
chr3 (46-95)||(25624477-25624526)
[»] chr8 (1 HSPs)
chr8 (102-242)||(31334032-31334173)
[»] chr2 (1 HSPs)
chr2 (95-191)||(35292927-35293023)
[»] chr6 (1 HSPs)
chr6 (154-240)||(10064020-10064103)
[»] chr7 (3 HSPs)
chr7 (99-145)||(34661814-34661860)
chr7 (176-231)||(34661742-34661797)
chr7 (175-227)||(2473237-2473289)
[»] chr1 (1 HSPs)
chr1 (22-62)||(3808756-3808796)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25619393 - 25619636
Alignment:
Q  1 aattgtatggttattttttattctagtataactgattttctctccataattaattctaatttaaagctagcaattggagttttatattttagaatgagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25619393 aattgtatggttattttttattctagtataactgattttctctccataattaattctaatttaaagctagcaattggagttttatattttagaatgagca 25619492  T
Q  101 ttgctattgatagcgagagaattttcccgaaatcatcacgacatggtaaaagccaagtaacaatgtttttggcggaaaacattggagggtattggtgtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  25619493 ttgctattgatagcgagagaattttcccgaaatcatcacgacatggtaaaagccaagtaacaatgtttttggcggaaaacatcggagggaattggtgtaa 25619592  T
Q  201 ttaagataaatatgtttagtgtaaaaaatcattcgtggaatttg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25619593 ttaagataaatatgtttagtgtaaaaaatcattcgtggaatttg 25619636  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 25624477 - 25624526
Alignment:
Q  46 ataattaattctaatttaaagctagcaattggagttttatattttagaat 95  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25624477 ataattaattctaatttaaagctagaaattggagttttatatattagaat 25624526  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 31334032 - 31334173
Alignment:
Q  102 tgctattgatagcgagagaattttcccgaaatcatcacgacatggtaaa-agccaagtaacaatgtttttggcggaaaacattggagggtattggtgtaa 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |  | |||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  31334032 tgctattgatagcgagagaattttcccgaaagcatcacgacatgctttatagccaagtaacaatgtttttggcggaaaacatgggagggaattgatgtaa 31334131  T
Q  201 ttaagataaatatgtttagtgtaaaaaatcattcgtggaatt 242  Q
    ||||||||| ||| |||||||||||||| |||| || |||||    
T  31334132 ttaagataattatatttagtgtaaaaaaccatttgtagaatt 31334173  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 35293023 - 35292927
Alignment:
Q  95 tgagcattgctattgatagcgagagaattttcccgaaatcatcacgacatggtaaaagccaagtaacaatgtttttggcggaaaacattggagggta 191  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||| | | |||||||||||| ||||||||||||||||||| | ||||||    
T  35293023 tgagcattgctattgatagcgagagaattttcccgaaagcatcacgccatgcttatagccaagtaacagtgtttttggcggaaaacatggtagggta 35292927  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 10064020 - 10064103
Alignment:
Q  154 caagtaacaatgtttttggcggaaaacattggagggtattggtgtaattaagataaatatgtttagtgtaaaaaatcattcgtggaa 240  Q
    ||||||||| |||||||||||||||| || |||||||||||   ||||||||| || ||||||||||||||||| ||||||||||||    
T  10064020 caagtaacagtgtttttggcggaaaatatgggagggtattg---taattaagacaattatgtttagtgtaaaaattcattcgtggaa 10064103  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 34661860 - 34661814
Alignment:
Q  99 cattgctattgatagcgagagaattttcccgaaatcatcacgacatg 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  34661860 cattgctattgatagcgagagaattttcccgaaaccatcacgacatg 34661814  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 34661797 - 34661742
Alignment:
Q  176 aaaacattggagggtattggtgtaattaagataaatatgtttagtgtaaaaaatca 231  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  34661797 aaaacatcggagggtattgatgtaattaagataattatgtttagtgtaaaatatca 34661742  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2473289 - 2473237
Alignment:
Q  175 gaaaacattggagggtattggtgtaattaagataaatatgtttagtgtaaaaa 227  Q
    |||||||  ||||||||||| ||||||||||| || ||| |||||||||||||    
T  2473289 gaaaacaagggagggtattgatgtaattaagaaaattatatttagtgtaaaaa 2473237  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 3808796 - 3808756
Alignment:
Q  22 tctagtataactgattttctctccataattaattctaattt 62  Q
    |||||| ||| ||||||| ||||||||||||||||||||||    
T  3808796 tctagtgtaattgattttgtctccataattaattctaattt 3808756  T

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