View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14026_low_8 (Length: 240)
Name: NF14026_low_8
Description: NF14026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14026_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35706171 - 35705949
Alignment:
| Q |
1 |
tcacaggctgctaatttgtcgacatcttgtcggaagaacaacttagtaccctctcctgctgcacccaaaaatggacttgtatagctgttatttacaagag |
100 |
Q |
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| T |
35706171 |
tcacaggctgctaatttgtcgacatcttgtcggaagaacaacttagtaccctctcctgctgcacccaaaaatggacttgtatagctgttatttacaagag |
35706072 |
T |
|
| Q |
101 |
ttagagcaaggataaagtagaaataatggatggatttgggaatcatatattca-attgcatctatcttccnnnnnnnnaatggcatattgcctctcatcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
35706071 |
ttagagcaaggataaagtagaaataatggatggatttgggaatcatatattcacattgcatctatcttccttttttttaatgtcatattgcctctcatcc |
35705972 |
T |
|
| Q |
200 |
tcaaatttcgcttcaaggagaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35705971 |
ccaaatttcgcttcaaggagaat |
35705949 |
T |
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