View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14027_low_1 (Length: 423)

Name: NF14027_low_1
Description: NF14027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14027_low_1
NF14027_low_1
[»] chr4 (2 HSPs)
chr4 (16-230)||(18342770-18342984)
chr4 (77-230)||(48288714-48288862)
[»] chr2 (1 HSPs)
chr2 (16-230)||(36840543-36840757)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-230)||(164380-164594)
[»] chr6 (1 HSPs)
chr6 (16-230)||(14249132-14249346)
[»] chr8 (4 HSPs)
chr8 (236-405)||(12008069-12008238)
chr8 (230-405)||(11996326-11996501)
chr8 (233-384)||(11986780-11986931)
chr8 (230-397)||(12002837-12003004)
[»] chr3 (1 HSPs)
chr3 (16-123)||(46699127-46699234)
[»] scaffold1779 (1 HSPs)
scaffold1779 (16-230)||(733-947)
[»] chr7 (1 HSPs)
chr7 (288-350)||(28881533-28881595)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 18342984 - 18342770
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342984 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 18342885  T
Q  116 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342884 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 18342785  T
Q  216 gaaatccaaaaggaa 230  Q
    |||||||||||||||    
T  18342784 gaaatccaaaaggaa 18342770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 48288862 - 48288714
Alignment:
Q  77 aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa 176  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||  |  |||| |||    ||||||||||||||||||| || ||| |||||||||||    
T  48288862 aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa 48288768  T
Q  177 agtatgatgataatgcggcggttctcattgataaagaaggaaatccaaaaggaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48288767 agtatgatgataatgcggcggttctcattgataaagaaggaaattcaaaaggaa 48288714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 36840757 - 36840543
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840757 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 36840658  T
Q  116 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840657 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 36840558  T
Q  216 gaaatccaaaaggaa 230  Q
    |||||||||||||||    
T  36840557 gaaatccaaaaggaa 36840543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 164380 - 164594
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  164380 cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg 164479  T
Q  116 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 215  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  164480 atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag 164579  T
Q  216 gaaatccaaaaggaa 230  Q
    |||||||||||||||    
T  164580 gaaatccaaaaggaa 164594  T

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Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 14249346 - 14249132
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  14249346 cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg 14249247  T
Q  116 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 215  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14249246 atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag 14249147  T
Q  216 gaaatccaaaaggaa 230  Q
    |||||||||||||||    
T  14249146 gaaatccaaaaggaa 14249132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 236 - 405
Target Start/End: Original strand, 12008069 - 12008238
Alignment:
Q  236 ataggcagctgcaaacctaggccaaccttttcttcctaaggtctcttcttcaaaatctttgataaactcatttatcacttcatctattctttcttctgta 335  Q
    ||||||||||||||| |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12008069 ataggcagctgcaaatctaggccaacattttctttctaaggacccttcttcaaaatctttgataaactcatttatcacttcatctattctttcttctgta 12008168  T
Q  336 aggttttcaacatcactgaacactcctttagcccactcatttgatacacactgatttaacataaatatca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12008169 aggttttcaacatcactgaacactcctttagcccactcatttgatacacactgatttaacataaatatca 12008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 230 - 405
Target Start/End: Original strand, 11996326 - 11996501
Alignment:
Q  230 aacagtataggcagctgcaaacctaggccaaccttttcttcctaaggtctcttcttcaaaatctttgataaactcatttatcacttcatctattctttct 329  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||   ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  11996326 aacagtataggcagctgcaaacctaggccaacctttactttctaaggaaccttcttcaaaatctttgataaactcctctaacacttcatctattctttct 11996425  T
Q  330 tctgtaaggttttcaacatcactgaacactcctttagcccactcatttgatacacactgatttaacataaatatca 405  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||  |||||| | |||| |||||||    
T  11996426 tctgtaaggttttcaacatcactgaagactcctttagcccattcatttgatactaactgatatgacatcaatatca 11996501  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 233 - 384
Target Start/End: Original strand, 11986780 - 11986931
Alignment:
Q  233 agtataggcagctgcaaacctaggccaaccttttcttcctaaggtctcttcttcaaaatctttgataaactcatttatcacttcatctattctttcttct 332  Q
    |||||||| ||||  |||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||| ||||| |||||||||||||| || |||    
T  11986780 agtatagggagctataaacctaggccaaccttttctttctaaggacccttgttcaaaatctttgataaactcctttattacttcatctattctctcatct 11986879  T
Q  333 gtaaggttttcaacatcactgaacactcctttagcccactcatttgatacac 384  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  11986880 gtaagattttcaacatcactgaagactcctttagcccactcatttgatacac 11986931  T

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Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 230 - 397
Target Start/End: Original strand, 12002837 - 12003004
Alignment:
Q  230 aacagtataggcagctgcaaacctaggccaaccttttcttcctaaggtctcttcttcaaaatctttgataaactcatttatcacttcatctattctttct 329  Q
    |||||||||||||||   | | |||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  12002837 aacagtataggcagccaaatatctaggccaaccttttctttctaaggacccttcttcaaaatctttgataaactcctttatcacttcatctattctctct 12002936  T
Q  330 tctgtaaggttttcaacatcactgaacactcctttagcccactcatttgatacacactgatttaacat 397  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||| ||| |||| ||||    
T  12002937 tctgtaagattttcaacatcactgaagactcctttagcccattcattcgatacaaactaatttgacat 12003004  T

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Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 46699234 - 46699127
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46699234 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 46699135  T
Q  116 atcagggc 123  Q
    ||||||||    
T  46699134 atcagggc 46699127  T

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Target: scaffold1779 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 733 - 947
Alignment:
Q  16 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg 115  Q
    |||||||||||||||||| || |||||| ||||||||||| || |||||||||| |||||  |||||||||||||| || || |||||||||| ||||||    
T  733 cataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagtg 832  T
Q  116 atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag 215  Q
    ||||| ||||||||||||||||||||||||||||| |||||    || || || ||||||   |||||||| ||||| || ||| |||||||| ||||||    
T  833 atcagagctgtaattgtacgtacttgtaaagaactcaaacgcgacaacgggatgataatacgatatgatgacaatgctgccgttgtcattgatcaagaag 932  T
Q  216 gaaatccaaaaggaa 230  Q
    |||||||||||||||    
T  933 gaaatccaaaaggaa 947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 28881595 - 28881533
Alignment:
Q  288 aaatctttgataaactcatttatcacttcatctattctttcttctgtaaggttttcaacatca 350  Q
    |||||||||||||||||  |||  |||| ||||||||| ||||||||||| ||||||| ||||    
T  28881595 aaatctttgataaactctattagtactttatctattctctcttctgtaagattttcaatatca 28881533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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