View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14028_high_10 (Length: 504)

Name: NF14028_high_10
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14028_high_10
NF14028_high_10
[»] chr6 (3 HSPs)
chr6 (49-210)||(21188815-21188976)
chr6 (239-364)||(21188667-21188790)
chr6 (341-395)||(1101034-1101088)
[»] scaffold0272 (2 HSPs)
scaffold0272 (276-467)||(9984-10180)
scaffold0272 (145-210)||(9873-9938)
[»] chr7 (2 HSPs)
chr7 (278-418)||(8178027-8178167)
chr7 (350-399)||(10486560-10486609)
[»] chr8 (1 HSPs)
chr8 (341-418)||(2704023-2704100)
[»] chr2 (2 HSPs)
chr2 (348-395)||(4318790-4318837)
chr2 (287-393)||(35581415-35581520)
[»] chr1 (1 HSPs)
chr1 (357-399)||(19023345-19023387)
[»] scaffold0094 (1 HSPs)
scaffold0094 (348-395)||(15223-15270)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 21188976 - 21188815
Alignment:
Q  49 gttacattttgttcaatagatttggttgtatacattgtacccnnnnnnnnctacttggggtttttcatttgttctaagcgattatgttcaatcgcgataa 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188976 gttacattttgttcaatagatttggttttatacattgtacccaaaaaaaactacttggggtttttcatttgttctaagcgattatgttcaatcgcgataa 21188877  T
Q  149 tgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188876 tgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg 21188815  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 239 - 364
Target Start/End: Complemental strand, 21188790 - 21188667
Alignment:
Q  239 caacagtgacttatattattcattcattacggtgtgtaggtaatacacgatggaatcaaatcgaaaatatagcgactagtatacaattctgacatcctta 338  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21188790 caacagtgacttatattattcattcatta--gagtgtaggtaatacacgatggaatcaaatcgaaaatatggcgactagtatacaattctgacatcctta 21188693  T
Q  339 aaaaagtacgagcgacaaaatttatt 364  Q
    ||||||||||||||||||||||||||    
T  21188692 aaaaagtacgagcgacaaaatttatt 21188667  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 1101034 - 1101088
Alignment:
Q  341 aaagtacgagcgacaaaatttatttgtctcctagcaaaacttatcttaaagtttg 395  Q
    |||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  1101034 aaagtatgagcgacaaaatttgattgtctcctagcaaaacttttcttaaagtttg 1101088  T

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Target: scaffold0272 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 276 - 467
Target Start/End: Original strand, 9984 - 10180
Alignment:
Q  276 aggtaatacacgatggaatcaaatcgaaaatatagcgactagtatacaattctgacatccttaaaaaagtacgagcgacaaaatttatttgtctcctagc 375  Q
    |||||||| |||||| |||||||||||||||||  | |||||||||||||| ||||||||||||||||||| ||||||  |||||| ||| |||||||||    
T  9984 aggtaataaacgatgaaatcaaatcgaaaatatgacaactagtatacaattttgacatccttaaaaaagtatgagcgatgaaatttctttatctcctagc 10083  T
Q  376 -aaaacttatcttaaagtttgaaaaatgattaagaagtgatctataattaga----tagggtatgaccaaattctgaccagttgttagtgttatcaa 467  Q
     |||||||||||||||||||||||||||| ||||||| ||| ||||||||||     | |||||  |||||||||||||||||||| ||||||||||    
T  10084 aaaaacttatcttaaagtttgaaaaatgactaagaagcgatttataattagacatccatggtatagccaaattctgaccagttgtttgtgttatcaa 10180  T

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Target: scaffold0272; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 9873 - 9938
Alignment:
Q  145 ataatgataatgaagacgacaacgaaataagaatgaaatagtgtaatttcaaagaagtgattcttg 210  Q
    |||||||| |||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9873 ataatgatgatgacgatgacaacgaaattagaatgaaatagtgtaatttcgaagaagtgattcttg 9938  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 418
Target Start/End: Original strand, 8178027 - 8178167
Alignment:
Q  278 gtaatacacgatggaatcaaatcgaaaatatagcgactagtatacaattctgacatccttaaaaaagtacgagcgacaaaatttatttgtctcctagcaa 377  Q
    |||||||| ||||||||| |||| ||||  | |||||||| |||||||| ||||  |||    || ||| | || |||||||||  ||||||||||||||    
T  8178027 gtaatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaa 8178126  T
Q  378 aacttatcttaaagtttgaaaaatgattaagaagtgatcta 418  Q
    ||||||||||||||||||  |||||| | | ||||||||||    
T  8178127 aacttatcttaaagtttgggaaatgagttaaaagtgatcta 8178167  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 10486560 - 10486609
Alignment:
Q  350 gcgacaaaatttatttgtctcctagcaaaacttatcttaaagtttgaaaa 399  Q
    |||||| |||||  |||||||||| |||||||||||||||||||||||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaa 10486609  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 2704023 - 2704100
Alignment:
Q  341 aaagtacgagcgacaaaatttatttgtctcctagcaaaacttatcttaaagtttgaaaaatgattaagaagtgatcta 418  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||||||  ||| ||||| | ||||||||||    
T  2704023 aaagtatgagcgacataatttgcttgtctcctaacaaaacttatcttaaagtttctaaattgatttaaaagtgatcta 2704100  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 4318790 - 4318837
Alignment:
Q  348 gagcgacaaaatttatttgtctcctagcaaaacttatcttaaagtttg 395  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  4318790 gagcgacaacatttacttgtctcctaacaaaacttatcttaaagtttg 4318837  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 35581415 - 35581520
Alignment:
Q  287 gatggaatcaaatcgaaaatatagcgactagtatacaattctgacatccttaaaaaagtacgagcgacaaaatttatttgtctcctagcaaaacttatct 386  Q
    |||||||||||||| ||||| ||| |||||| |||||||  ||||| ||||  | | ||| ||||||||| |||  ||||||| ||| ||||||||||||    
T  35581415 gatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgcaga-gtatgagcgacaatattagtttgtcttctaacaaaacttatct 35581513  T
Q  387 taaagtt 393  Q
    |||||||    
T  35581514 taaagtt 35581520  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 19023345 - 19023387
Alignment:
Q  357 aatttatttgtctcctagcaaaacttatcttaaagtttgaaaa 399  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  19023345 aatttgtttgtctcctaacaaaacttatcttaaagtttgaaaa 19023387  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 15270 - 15223
Alignment:
Q  348 gagcgacaaaatttatttgtctcctagcaaaacttatcttaaagtttg 395  Q
    |||||||||||||   |||||||||| |||||||||||||||||||||    
T  15270 gagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttg 15223  T

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