View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_high_14 (Length: 420)
Name: NF14028_high_14
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_high_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 2489528 - 2489120
Alignment:
| Q |
9 |
aattatactttggtttcttactcacaatctgcctttatgtgcttagaatctctaaatatctatttcattcattttgattttaaattagaaacttctccaa |
108 |
Q |
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| T |
2489528 |
aattatactttggtttcttactcacaatctgcctttatgtgcttcgaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaa |
2489429 |
T |
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| Q |
109 |
gcctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatcttcttttaccttccaannnnnnnnnnnnnnnnnnnagaaaattcg |
208 |
Q |
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| T |
2489428 |
gcctggtgaaatggtcattgttctcgactcaacaccacttgtctttgcactcatcttcttttaccttccaatgctgctgctgctgct---agaaaattcg |
2489332 |
T |
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| Q |
209 |
gtgtgttgctgcagcagtattgtttattaactttagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaata |
308 |
Q |
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| T |
2489331 |
gtgtgttgctgcagcagtattgtttattaactttagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaata |
2489232 |
T |
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| Q |
309 |
tgtggttcagaaattgaaattttgtgttatcttttttccatcagctactttatgtaattactttcatcttttgtattttgtaatattaagagatgaaggg |
408 |
Q |
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| T |
2489231 |
tgtggttcagaaattgaaattttgtgttatctttttttcatcagctactttatgtaactactttcatcttttgtattttgtaatattaagagatgaaggg |
2489132 |
T |
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| Q |
409 |
ttacaacttaca |
420 |
Q |
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| T |
2489131 |
ttacaacttaca |
2489120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 5034609 - 5034497
Alignment:
| Q |
64 |
atatctatttcattcattttgattttaaattagaaacttctccaagcctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatc |
163 |
Q |
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| T |
5034609 |
atatctatttcattcatattgatgtgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatc |
5034510 |
T |
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| Q |
164 |
ttcttttaccttc |
176 |
Q |
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| T |
5034509 |
ttctttttccttc |
5034497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 2524505 - 2524417
Alignment:
| Q |
88 |
ttaaattagaaacttctccaagcctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatcttcttttaccttc |
176 |
Q |
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| T |
2524505 |
ttaatttagaaacttctctaagcatagttaaattgacattgttattgactcaacacttcatttctttgcactcatcttcttttgccttc |
2524417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 2524329 - 2524269
Alignment:
| Q |
299 |
catattaatatgtggttcagaaattgaaattttgtgttatcttttttccatcagctacttt |
359 |
Q |
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| T |
2524329 |
catagtaatatgtggtttagtaattgaaattttgggttatcttttttggattagctacttt |
2524269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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