View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_high_15 (Length: 364)
Name: NF14028_high_15
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 9419813 - 9419978
Alignment:
| Q |
17 |
tggagattcccaatgcataaaatttgtcctctaactaatgaatatgtattctcat----------ttcaaaaacaaaagtacaaaataaatcagcttgaa |
106 |
Q |
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| T |
9419813 |
tggagattcc-aatgcatacaatttctcctctaactaacgaatatgtattctcattttttttcatttcaaaaacaaaagtacaaaataaatcagcttgaa |
9419911 |
T |
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| Q |
107 |
atttacaaatacaatcaaataagaattttg-gttttaaatattcattgtcaacttaataaatgagcc |
172 |
Q |
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| T |
9419912 |
atttacaaatacaattaaacaagaatttggtgttttaaatattcattgtcaactttatgaatgagcc |
9419978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 9401338 - 9401427
Alignment:
| Q |
83 |
aagtacaaaataaatcagcttgaaatttacaaatacaatcaaataagaattttg-gttttaaatattcattgtcaacttaataaatgagc |
171 |
Q |
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| T |
9401338 |
aagtacaaaataaatcagcttgaaatttacaaatacaattaaacaagaatttggtgttttaaatattcattgtcaactttatgaatgagc |
9401427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 9412399 - 9412512
Alignment:
| Q |
71 |
tttcaaaaacaaaagtacaaaataaatcagcttgaaatttacaaatacaatcaaataagaattttg-gttttaaatattcattgtcaacttaataaatga |
169 |
Q |
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| T |
9412399 |
tttcaaaaagaaaagtacgaaataaatcagcttcaaatttacaaatac-gttaaacaagaatttggtgctttaaatattcattgtcaactttatgaatga |
9412497 |
T |
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| Q |
170 |
gcctaatggaagaag |
184 |
Q |
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| T |
9412498 |
gcataatggaagaag |
9412512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 9453203 - 9453328
Alignment:
| Q |
17 |
tggagattcccaatgcataaaatttgtcctctaactaatgaatatgtattctcattt--------caaaaacaaaagtacaaaataaatcagcttgaaat |
108 |
Q |
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| T |
9453203 |
tggagattccaaatgcatacaatttttcctctagctaatgaatatgtaatctcatttttccgtttcaaaaacaattgtacaaaataaataagcttgaaat |
9453302 |
T |
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| Q |
109 |
ttacaaatacaatcaaataagaattt |
134 |
Q |
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| T |
9453303 |
ttacaaatacaattaaacaataattt |
9453328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 9432014 - 9432062
Alignment:
| Q |
68 |
tcatttcaaaaacaaaagtacaaaataaatcagcttgaaatttacaaat |
116 |
Q |
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| T |
9432014 |
tcatttcaaaaacataagtacaaaataaatcagcttgaaatttacaaat |
9432062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 18583726 - 18583601
Alignment:
| Q |
17 |
tggagattcccaatgcataaaatttgtcctctaactaatgaatatgtattctc--------atttcaaaaacaaaagtacaaaataaatcagcttgaaat |
108 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||| |
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| T |
18583726 |
tggagattcccaatgcacacaattagtcctctaactaatgaatatgtattctcgttttcttgtttaaaaaacgaaagtacaaaataaatcagctggaaat |
18583627 |
T |
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| Q |
109 |
ttacaaatacaatcaaataagaattt |
134 |
Q |
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| T |
18583626 |
taacaaatacaattaaacaagaattt |
18583601 |
T |
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