View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_high_18 (Length: 309)
Name: NF14028_high_18
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 16287948 - 16288206
Alignment:
| Q |
1 |
agtaataaaatacgttttggtaatcatagggtagct-----ttgttgaccaaatataattaaagataaatcatttcatacctctttagtaaaggcaaagt |
95 |
Q |
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| T |
16287948 |
agtaataaaatacgttttggtaatcatagggtagctagaatttgttgaccaaatataattaaagataaatcatttcatacctctttagtaaaggcaaagt |
16288047 |
T |
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| Q |
96 |
ttgaagcaataaaaagattagaagaataagacgtatcaacaccaaatgatgcaatataattggttcaacaccacaataatggcacatgttaaaatatcat |
195 |
Q |
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| T |
16288048 |
ttgaagcaataaaaagattagaagaataagacgtatcaacaccaaattatgcaatataattggttcaacaccacaataatggcacatgttaaaatatcat |
16288147 |
T |
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| Q |
196 |
tggacgaaggtttttaattgacgtgtttaaaaataatttaactttttggtcaatcattt |
254 |
Q |
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| T |
16288148 |
tggacgaaggtttttaattgacgtgtttaaaaataatttaactttttggtcaatcattt |
16288206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 14875031 - 14875124
Alignment:
| Q |
143 |
gatgcaatataattggttcaacaccacaataatggcacatgttaaaatatcattggacgaaggtttttaattgacgtgtttaaaaataatttaa |
236 |
Q |
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| T |
14875031 |
gatgtaatataattggctcaacaacacactaatgacacatgttatgatatcatcgaacgtaaaattttaattgacgtgttcaaaaataatttaa |
14875124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 32024438 - 32024363
Alignment:
| Q |
147 |
caatataattggttcaacaccacaataatggcacatgttaaaatatcattggacgaaggtttttaattgacgtgtt |
222 |
Q |
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| T |
32024438 |
caatatgattggctcaacaacacaataatcacacatgttaaaataccattggatgaaattttttaaatgacgtgtt |
32024363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 6442558 - 6442609
Alignment:
| Q |
36 |
tttgttgaccaaatataattaaagataaatcatttcatacctctttagtaaa |
87 |
Q |
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| T |
6442558 |
tttgttgaccaaataaaattaaagattgatcacttcatacctgtttagtaaa |
6442609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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