View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_high_7 (Length: 574)
Name: NF14028_high_7
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 52708561 - 52708260
Alignment:
| Q |
19 |
aattggacccaaaaacatcctgagaaacttacctaaatgaaagaaattannnnnnnnnnnnnnnnnnnnattagtggaagtaattaattaagaaagaaag |
118 |
Q |
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| T |
52708561 |
aattggacccaaaaacatcctgagaaacttacctaaatgaaagaaattaatgatgatgatgatgaatgaattggtggaagtaattaattaagaaagaaag |
52708462 |
T |
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| Q |
119 |
aaa----ccttgagcatgtccaggaaggaggtaagaagcatcgccatcaacaatgatgcatctggctctttgcaaatcttcatctaactgcgatgcgatg |
214 |
Q |
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| T |
52708461 |
aaagaaaccttgagcatgtccaggaaggaggtaagaagcatcgccatcaacgatgatgcatctggctctttgcaaatcttcatctaactgcgatgcgat- |
52708363 |
T |
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| Q |
215 |
agatgcgatagtaat-aataaataaacggatccaatccattaaagaaattgaaattgaaaatggacaattgaagttcctggtaccttatcagctaaggat |
313 |
Q |
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| T |
52708362 |
ag------taataataaataaataaacggatccaatacattaaagaaattgaaattga--------aattgaagttcctggtaccttatcagctaaggat |
52708277 |
T |
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| Q |
314 |
ggttgaatgagtttatt |
330 |
Q |
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| T |
52708276 |
ggttgaatgagtttatt |
52708260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 52708200 - 52708102
Alignment:
| Q |
390 |
cacgctgacgaagtggttgttcatcgcttaatgtttttgagatgtgaacggaaactgaatcctgaatctctttagcttcttctaatacgcttactactg |
488 |
Q |
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| T |
52708200 |
cacgctgacgaagtggttgttcatcgcttaatgtttttgagatgtgaacggaaactgaatcctgaatctctttagcttcttctaatacgcttactactg |
52708102 |
T |
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