View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_1 (Length: 679)
Name: NF14028_low_1
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Original strand, 11295126 - 11295800
Alignment:
| Q |
16 |
gttatctcatgcaaatgaccctactttcttacaattttttgtatctttccatttttacttaatgttacattacatcactatgctataaaaatgcagaaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11295126 |
gttatctcatgcaaatgaccctactttcttacaattttttgtatctttccatttttacttaatgttacattacatcactatgctataaaaatgcagaaca |
11295225 |
T |
|
| Q |
116 |
taacatgtcattttctgaattttaataactaccttactgatttagtttcagtaaaattcaatttaggcaggaaagtgattaaatagcaataagttattat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11295226 |
taacatgtcattttctgaattttaataactaccttactgatttagtttcagtaaaattcaatttaggcaggaaagtgattaaatagcaataagttattat |
11295325 |
T |
|
| Q |
216 |
actatttttgaataggcaaacactacctttcaactgcattattcaactgatgaacaccagccatatatgcagtatatttgtcagttgttcaaattaagga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11295326 |
actatttttgaataggcaaacactacctttcaactgcattattcaactgatgaacaccagcc--atatgcagtatatttgtcagttgttcaaattaagga |
11295423 |
T |
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| Q |
316 |
acaataaaaataaacccttctcctagctaacaaacaattacaattaaaacactgacataaggttgttgtgaaccatgcaattgcaagcatgctacaatgt |
415 |
Q |
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| T |
11295424 |
acaataaaaataaacccttctcctagctaacaaacaattacaattaaaacactgacataaggttgttgtgaaccatgcaattgcaagcatgctacaatgt |
11295523 |
T |
|
| Q |
416 |
agtaagcatttctaagactttcacccttcggtgacataagagaattgtaaaaggtccataaaaatatttgaattctaaaa-tttttgttaatagtccttg |
514 |
Q |
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| T |
11295524 |
agtaagcatttctaagactttcacccttcagtgacataagagaattgtcaaaggtccataaaaatatttgaattctaaaattttttgtttttagtccttg |
11295623 |
T |
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| Q |
515 |
aacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaaatttgttc------------------ataatatttattttagac |
596 |
Q |
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| T |
11295624 |
aacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaaatttgttcatattgaaattcgtctctataatatttattttagac |
11295723 |
T |
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| Q |
597 |
ttattctaagagacnnnnnnntcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcat |
673 |
Q |
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| T |
11295724 |
ttattctaagagacaaaaaaatcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcat |
11295800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 14186830 - 14186758
Alignment:
| Q |
203 |
aataagttattatactatttttgaataggcaaa-cactacctttcaactgcattattcaactgatgaacacca |
274 |
Q |
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| T |
14186830 |
aataagctattatactatttttgaataggcaaaacactacctttcaattgcactattcaacttatgaacacca |
14186758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 14186748 - 14186676
Alignment:
| Q |
203 |
aataagttattatactatttttgaataggcaaa-cactacctttcaactgcattattcaactgatgaacacca |
274 |
Q |
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|||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||| |||||||||| |
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| T |
14186748 |
aataagctattatactatttttgcataggcaaaacactacctttcaattgcactattcaacttatgaacacca |
14186676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 14187004 - 14186965
Alignment:
| Q |
95 |
atgctataaaaatgcagaacataacatgtcattttctgaa |
134 |
Q |
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| T |
14187004 |
atgctataaaaatgtagaacataacatgtcattttctgaa |
14186965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 14186671 - 14186637
Alignment:
| Q |
304 |
tcaaattaaggaacaataaaaataaacccttctcc |
338 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14186671 |
tcaaattaaggaacaataaaaataaacccttctcc |
14186637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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