View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_10 (Length: 531)
Name: NF14028_low_10
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Complemental strand, 40125980 - 40125469
Alignment:
| Q |
15 |
tcatcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttggagaaatgtttgaattgaaaatcttagttgt |
114 |
Q |
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| T |
40125980 |
tcatcaacaatttcaggccaattagatcttaatcagatactcaaattactagcgttgtatttaaacttcgagaaatgtttgaattgcaaatcttagttgt |
40125881 |
T |
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| Q |
115 |
acagcatatgtgaagggtgacttccctctatgatttgagagttaattctttaatttgttgaaggggatgcataaaactgaaaacaataatcacatgaaat |
214 |
Q |
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| T |
40125880 |
acagcatatgggaagggtgacttccctctatgatctgagagttaattctttaatttgttgaaggggatgcataaaactgaaaacaataatcacatgaaat |
40125781 |
T |
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| Q |
215 |
atgaagagaggttgttaagtaaaaacctgcatttcnnnnnnnnnnnnnnnnnncctgcatttctacaatgtgtggccatatagccaatttaggatcacaa |
314 |
Q |
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| T |
40125780 |
atgaagagaggttgttaagtaaaaacctgcatttcaaaaagaaaattaaaaaacctgcatttctacaatgtgtggccatatagccaatttaggatcacaa |
40125681 |
T |
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| Q |
315 |
aaatcatttacctatgatttgctggtatattaaattcataaactatgtatgtattcgtcatagacctcacatccacaacttaaacatctactttttctta |
414 |
Q |
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| T |
40125680 |
aaatcatttacctatgattttctggtatattaaattcataaactatgtatgtattcgtcatagacctcacatccacaacttaaacatctactttttctta |
40125581 |
T |
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| Q |
415 |
accaaaaataagataaaaatacaactactttattttagccaaagagcagcttcaaattaaaacaaatcaaactcttggggtgatgacgggaggaacaaaa |
514 |
Q |
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| T |
40125580 |
accaaaaataagataaaaatacaactactttattttagccaaagagcagcttc-----caaacaaatcaaactcttggggtgatgatgggaggaacaaaa |
40125486 |
T |
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| Q |
515 |
caccagttaccaaaaga |
531 |
Q |
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| T |
40125485 |
caccagttaccaaaaga |
40125469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 40093054 - 40092997
Alignment:
| Q |
474 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaaga |
531 |
Q |
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| T |
40093054 |
aaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaaga |
40092997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 40121874 - 40121817
Alignment:
| Q |
474 |
aaacaaatcaaactcttggggtgatgacgggaggaacaaaacaccagttaccaaaaga |
531 |
Q |
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| T |
40121874 |
aaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaaga |
40121817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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