View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_12 (Length: 493)
Name: NF14028_low_12
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 41794493 - 41794964
Alignment:
| Q |
19 |
atatgtataagtggtaaaaaagtgtagtgtttttctaaaaacaaagaaacaactattgttattttttctttcttttcatacagtgatgcttacaagaata |
118 |
Q |
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| T |
41794493 |
atatgtataagtggtaaaaaagtgtagggtttttctaaaaacaaagaaacaacttttgttattttttctttcttttcatatagtgatgcttacaagaata |
41794592 |
T |
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| Q |
119 |
agaaagtggactacttactttagcgtgtcacaatcaatttcaccttattttattttaaagataaagaaaaccatcataatctacactctagattatgatg |
218 |
Q |
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| T |
41794593 |
agaaagtggactactttctttagcgtgtcacaatcaatttcaccttattttattttaaagataaagaaaaccatcataatctatactctagattatgatg |
41794692 |
T |
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| Q |
219 |
cacaatctttaaattatttgagaaacaaacaaaaataattgacaatagaatgaatcaccctctcaagtacacaccaatcagcactatatataatgagtca |
318 |
Q |
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| T |
41794693 |
cacaatctttaaattatttcagaaacaaacaaaaataattgacaatagaatgaatcaccctctcaagtacacaccaatcagcactatatataatgagtca |
41794792 |
T |
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| Q |
319 |
ttcgtgcccttaattcaccaaaccatcctatctcactacaagtttcttttcctttcctcatcagagtaaacactataatggacaatatgtgtcgattaaa |
418 |
Q |
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| T |
41794793 |
ttcatgcccttaattcaccaaaccatcctatctcactacaagtttcttttcctttcctcatcagagtaaacact---atggacaatatgtgtcgattaaa |
41794889 |
T |
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| Q |
419 |
attccaaaatatatcaacactgacacaagggatgaaaactcattcaaatctaatgaaatttacacaaatattcat |
493 |
Q |
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| T |
41794890 |
attccaaaatatatcaacactgactcaagggatgaaaactcattcaaatctaatgaaatttacacaaatattcat |
41794964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 396 - 493
Target Start/End: Original strand, 41760015 - 41760112
Alignment:
| Q |
396 |
atggacaatatgtgtcgattaaaattccaaaatatatcaacactgacacaagggatgaaaactcattcaaatctaatgaaatttacacaaatattcat |
493 |
Q |
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| T |
41760015 |
atggacaatatgtgtcaactaaatttccaaaatatatcaacactgactcaagggatgaaaactcattcccatcttatgaaatttacacaaatattcat |
41760112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 41759878 - 41759965
Alignment:
| Q |
270 |
gaatcaccctctcaagtacacaccaatcagcactatatataatgagtcattcgtgcccttaattcaccaaaccatcctatctcactac |
357 |
Q |
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| T |
41759878 |
gaatcaccctctccagtacacaccagtcaccactatatataatgaggccttcctggctttaattcaccaaaccatcatatctcactac |
41759965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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